CX291240

Overview
NameCX291240
Unique NameCX291240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length212
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10557 contig Ccv1_Contig10557:428..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.892e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:  113 IKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.892e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:  116 IKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.892e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:  115 IKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:  114 IKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH  AEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:  114 IKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEM+GH   EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:  114 IKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX291240 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IKPEMIGH*PAEFSISYKPVKHGRPGIGATHSSRFIPLK 119
            IKPEMIGH   EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:  107 IKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
The following BLAST results are available for this feature:
BLAST of CX291240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS15_PICMA1.892e-1494.8740S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS15_ORYSJ1.892e-1494.8740S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS15_ELAOL1.892e-1494.8740S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS154_ARATH2.470e-1492.3140S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH2.470e-1492.3140S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS15_PODAN7.188e-1489.7440S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_XENLA1.226e-1389.7440S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_RAT1.226e-1389.7440S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]
RS15_PONAB1.226e-1389.7440S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]
RS15_PIG1.226e-1389.7440S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]

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Properties
Property NameValue
Genbank descriptionC03005G01SK OF2 Citrus clementina cDNA clone C03005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291240 ID=CX291240; Name=CX291240; organism=Citrus clementina; type=EST; length=212bp
AAATCAAGCCGGAAATGATTGGGCATTAACCTGCTGAGTTCTCTATCTCA
TACAAGCCTGTGAAGCATGGTAGACCTGGTATTGGTGCTACCCATTCCTC
AAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGATATTTAG
CTTATTGTTATTTTCAGAAAACATCGAAGTTGATCAAATTTTTTGTGGTT
ACTTTTTTTTTT
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