CX291251

Overview
NameCX291251
Unique NameCX291251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3132 contig Ccv1_Contig3132:291..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 6.041e-83
Identity = 152/175 (86.86%), Postives = 169/175 (96.57%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 526
            MKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDS KDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDSYE
Sbjct:   68 MKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYE 242          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.081e-75
Identity = 135/175 (77.14%), Postives = 162/175 (92.57%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 526
            MKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDS  DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYE
Sbjct:   65 MKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15
Identity = 56/195 (28.72%), Postives = 99/195 (50.77%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SXKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 526
            M+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L + +  E
Sbjct:   24 MQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTLFDYEPDE 216          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 520
            MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   AES     ++D+
Sbjct:   48 MKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-SAESMSIYDDIDA 223          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 55/193 (28.50%), Postives = 98/193 (50.78%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 526
            M+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++ P   E +A++   L + +  E
Sbjct:   24 MQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII-PASFEGDADADATLYDYEPSE 215          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 54/188 (28.72%), Postives = 90/188 (47.87%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKN-PLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 508
            M+MVAA+KLR  Q  AEN R   +    +LG+               T T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R   +D  +   +++ N P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  +    G
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVL-RRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAG 210          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 54/188 (28.72%), Postives = 90/188 (47.87%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKN-PLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 508
            M+MVAA+KLR  Q  AEN R   +    +LG+               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R   +D  +   +++ N P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  S    G
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVL-RRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAG 210          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 51/185 (27.57%), Postives = 91/185 (49.19%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKN-PLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGG 499
            M+MVAA+KLR  Q  AEN R   +   ++L +               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R   +D  +   +++ N P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL + +  + G
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVL-RRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKG 207          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 52/184 (28.26%), Postives = 88/184 (47.83%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAES 493
            MKMVAASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K + +L R+    I     ++ +  L++     +   +L+     EFD   +IY+KF S ++ + T   V+  +P +    AE+
Sbjct:   24 MKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVATVIYNKFRSAITQVVTAQQVIPFAPAVATEPAET 207          
BLAST of CX291251 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 436
            MKMVAA+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+IL R       +   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+
Sbjct:   23 MKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISY 171          
The following BLAST results are available for this feature:
BLAST of CX291251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ATPG3_IPOBA6.041e-8386.86ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH2.081e-7577.14ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_ROSDO9.197e-1528.72ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_BOVIN5.046e-1331.64ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_DINSH6.591e-1328.50ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_METEP1.124e-1228.72ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METC41.468e-1228.72ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_METPB4.272e-1227.57ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_RHOCS5.579e-1228.26ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_RAT7.287e-1232.89ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionC03005H02SK OF2 Citrus clementina cDNA clone C03005H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291251 ID=CX291251; Name=CX291251; organism=Citrus clementina; type=EST; length=528bp
TATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAGCTG
AAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGACACT
CCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTTCTGACAA
AGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGAGTT
TGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATCTTG
GGAGAGAAGGCAAAGGCAATATTAGTACGTGACTCANAGAAAGATATTGA
ACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCCAGGTTT
CCGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGCTTTGAGG
ATTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAATGGC
AACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGGGAA
AGCTTGGTGAGCTAGACTCCTATGAAAT
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