CX291266

Overview
NameCX291266
Unique NameCX291266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.077e-58
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDIMQSVD 471
            MKYNPRV+SSRRKNRKA  TA SS RR++MS+PLSTDLRQKYNVRSMP+RKDD VQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT               AKGRAAA KEKGTKFT ED+MQ+VD
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD 146          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.455e-55
Identity = 108/146 (73.97%), Postives = 121/146 (82.88%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDIMQSVD 471
            MK+NPRVSSSRRKNRKA  TAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDD VQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT               A GRAAA KEKGTKF+ ED+M++VD
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMENVD 146          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.722e-52
Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDIMQSV 468
            MKYNPRV+SSRR+NRK   TA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDD  Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT               AKGRAAA K+KGTKFT  D+MQ+V
Sbjct:    1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQNV 145          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDI 456
            MK+NP V+S R KNRK    APS +RR +MS+PLS +LRQKYNVRSMP+RKDD VQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT               AK R    KEKG K+  E I
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKG-KYKEETI 140          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDI 456
            MK+NP V+S R KNRK    APS +RR +MS+PLS +LRQKYNVRSMP+RKDD VQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT               AK R    KEKG K+  E I
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKG-KYKEETI 140          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDI 456
            MK+NP V+S R KNRK    APS +RR +MS+PLS +LRQKYNVRSMP+RKDD VQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT               AK R    KEKG K+  E I
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKG-KYKEETI 140          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDI 456
            MK+NP V+S R KNRK    APS +RR +MS+PLS +LRQKYNVRSMP+RKDD VQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT               AK R    KEKG K+  E I
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKG-KYKEETI 140          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.021e-38
Identity = 86/142 (60.56%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDI 456
            MK+NP V+S R KNRK    APS +RR +MS+PLS +LRQKYNVRSMP+RKDD VQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT               AK R    KEKG K+  E I
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKG-KYKEETI 140          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.021e-38
Identity = 84/134 (62.69%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKG 432
            MK+NP V+S R KNRK    APS VRR +MS+PLS +LRQKYNVRSMP+RKDD VQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT               AK R    KEKG
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKG 133          
BLAST of CX291266 vs. ExPASy Swiss-Prot
Match: RL26_LITLI (60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKARLTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDXVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXAKGRAAAYKEKGTKFTPEDIMQS 465
            MK+N  VSS R KNRK    APS +RR +MS+P+S +LRQKYN RSMP+RKDD VQVVRG +KG++ GKVVQVYR+K+V+HIERI REK NG+TV VGI+PSKV+I                AK RA A  EKG K+T E +  S
Sbjct:    1 MKFNKMVSSDRGKNRKRHFNAPSHMRRKIMSSPMSKELRQKYNCRSMPIRKDDEVQVVRGHFKGQQVGKVVQVYRKKFVVHIERIQREKANGATVYVGIHPSKVLIVKLKMDKDRKRILDNKAKSRAKALAEKG-KYTEETMETS 144          
The following BLAST results are available for this feature:
BLAST of CX291266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RL261_ARATH1.077e-5878.0860S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH1.455e-5573.9760S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA5.722e-5270.3460S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26_MOUSE6.142e-3860.5660S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA6.142e-3860.5660S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN6.142e-3860.5660S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN6.142e-3860.5660S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT8.021e-3860.5660S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26L_HUMAN8.021e-3862.6960S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_LITLI3.048e-3757.9360S ribosomal protein L26 OS=Littorina littorea GN... [more]

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Properties
Property NameValue
Genbank descriptionC03006A10SK OF2 Citrus clementina cDNA clone C03006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291266 ID=CX291266; Name=CX291266; organism=Citrus clementina; type=EST; length=479bp
GTAAAACCCTAGGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAG
GGTGTCATCCTCTCGCCGTAAGAACCGGAAGGCGCGGTTGACCGCCCCTT
CCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGACCTCCGT
CAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACNAGGTCCA
GGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTTCAAGTGT
ATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTT
AATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCGTGATCAC
CAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCA
AGGGACGTGCCGCCGCTTACAAGGAGAAGGGTACCAAGTTCACCCCAGAG
GATATTATGCAGAGTGTTGACTAATTTTT
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