CX291281

Overview
NameCX291281
Unique NameCX291281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10700 contig Ccv1_Contig10700:551..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.239e-37
Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = 1
Query:   16 TSSNEDAHAWLSGVLTNHVTCLDGLDGSATK----LMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            T S+ED H WLSGVLTNHVTCLDGL+  +T     LME  L EL+ RA  SLAI V + P  +NVI+         FP+WVT+ DR LL+ +             DGSG+Y+T+ EAVA+ PDNSK R ++ V+ G Y            +M+VG+GMD TIITGS NVVDGSTTF
Sbjct:  138 TRSHEDLHVWLSGVLTNHVTCLDGLEEGSTDYIKTLMESHLNELILRARTSLAIFVTLFPAKSNVIEPV----TGNFPTWVTAGDRRLLQ-TLGKDIEPDIVVAKDGSGDYETLNEAVAAIPDNSKKRVIVLVRTGIYEENVDFGYQKKNVMLVGEGMDYTIITGSRNVVDGSTTF 308          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.793e-36
Identity = 90/173 (52.02%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   19 SSNEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            S + +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  N  V++    +     PSWV+SRDR L+  S             DG+G Y+T+ EAVA+APD SKTRYVIYVK+GTY            LMI+GDGM  TIITGSLNVVDGSTTF
Sbjct:  147 SEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLDELISRAKVALAMLASVTTPNDEVLRPGLGK----MPSWVSSRDRKLME-SSGKDIGANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVSSRKMNLMIIGDGMYATIITGSLNVVDGSTTF 313          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.201e-35
Identity = 89/173 (51.45%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   19 SSNEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            S + +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  N +V++    +     PSWV+SRDR L+  S             DG+G Y+T+ EAVA+APD SKTRYVIYVK+G Y            LMIVGDGM  TIITG+LNVVDGSTTF
Sbjct:  147 SEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLDELISRAKVALAMLASVTTPNDDVLRPGLGK----MPSWVSSRDRKLME-SSGKDIGANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGIYKENVEVSSRKMKLMIVGDGMHATIITGNLNVVDGSTTF 313          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 146.362 bits (368), Expect = 8.365e-35
Identity = 88/174 (50.57%), Postives = 112/174 (64.37%), Query Frame = 1
Query:   19 SSNEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            S + +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  + +V    ++    + PSWV+S DR L+  S             DG+G+Y+T+ EAVA+APD SKTRYVIYVK+GTY            LMIVGDGM  T ITGSLNVVDGSTTF+
Sbjct:  143 SEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLEELISRAKVALAMLASLTTQDEDV----FMTVLGKMPSWVSSMDRKLME-SSGKDIIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR 310          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 5.422e-34
Identity = 80/175 (45.71%), Postives = 110/175 (62.86%), Query Frame = 1
Query:   22 SNEDAHAWLSGVLTNHVTCLDGLDG---SATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPS-QXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            S  + H WLS VLTN++TCL+ +     ++ ++++P+L +L++RA  +LAI V++ P   ++      R    FPSW+T+ DR LL  S +            DG+G +KTV EAVA+AP+NS TRYVIYVKKG Y            LM+VGDG D TIITGSLNV+DGSTTF+
Sbjct:  153 SYSNVHTWLSSVLTNYMTCLESISDVSVNSKQIVKPQLEDLVSRARVALAIFVSVLPARDDLKMIISNR----FPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNVIDGSTTFR 323          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.975e-32
Identity = 81/170 (47.65%), Postives = 105/170 (61.76%), Query Frame = 1
Query:   19 SSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLV-ELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGST 525
            S + +A +WLSGVLTNHVTCLD L   +       ++ EL+ RA  +LA+L +++  N  V++Q   +     P WV+SRDR L+  S             DG+G+Y+T+ EAVA+APD +KTRYVIYVK G Y            LMIVGDGM+ TIITGSLNVVDGST
Sbjct:  142 SEHANAQSWLSGVLTNHVTCLDELTSFSLSTKNGTVLDELITRAKVALAMLASVTTPNDEVLRQGLGK----MPYWVSSRDRKLME-SSGKDIIANRVVAQDGTGDYQTLAEAVAAAPDKNKTRYVIYVKMGIYKENVVVTKKKMNLMIVGDGMNATIITGSLNVVDGST 306          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.133e-23
Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 1
Query:   22 SNEDAHAWLSGVLTNHVTCLDGL-DGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRL-LLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            S E+ H WLSGVLT+++TC+D + DG+  + +EP+L +L+++A  +LA+ ++ISP +   +           PSW++  D+  L   ++            DG+G Y TV  A+A+AP +S  R++IY+K G Y            L ++GDG D TIITG+L+  +   TF
Sbjct:  124 SYENIHTWLSGVLTSYITCIDEIGDGAYKRRVEPQLQDLISKAKVALALFISISPRDNTELNSVVPNS----PSWLSHVDKKDLYLNAEALKKIADVVVAKDGTGKYNTVNAAIAAAPQHSHKRFIIYIKTGIYDEIVAIENTKPNLTLIGDGQDSTIITGNLSASNVRRTF 291          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.624e-23
Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   22 SNEDAHAWLSGVLTNHVTCLDGL-DGSATKLMEPRLVELMARAANSLAILVAISPY-NTNVIQQYYLRKEIQFPSWVTSRDRL-LLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            S E+ H WLS VLT+++TC+D + +G+  + +EP+L +L++RA  +LA+ ++ISP  NT +I           PSW+   D+  L   ++            DG+G Y TV  A+A+AP +S+ R+VIY+K G Y            L ++GDG DLTIIT +L+  +   TF
Sbjct:  124 SYENVHTWLSSVLTSYITCIDEIGEGAYKRRVEPKLEDLISRARIALALFISISPRDNTELISVIP-----NSPSWLFHVDKKDLYLNAEALKKIADVVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITSNLSASNVRRTF 291          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.809e-21
Identity = 62/176 (35.23%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   10 EGTSSNEDAHAWLSGVLTNHVTCLDGL-DGSATKLMEPRLVELMARAANSLAILVAISPY-NTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTF 531
            E   S E++H WLS VLT+++TC+D + +G+  + +EP+L  L++RA   LA+ ++IS   NT +I           PSW+   D+   +               DG+G Y TV  A+A+AP +S+ R+VIY+K G Y            L ++GDG DLTIITG+L+  +   T+
Sbjct:   97 EMMESEENSHTWLSSVLTSYITCIDEIGEGAYKRRVEPKLENLISRARVVLALFISISLRDNTELISVIP-----NGPSWLFHVDK---KDLYLNAEIADVVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITGNLSASNVRRTY 264          
BLAST of CX291281 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.809e-21
Identity = 60/178 (33.71%), Postives = 84/178 (47.19%), Query Frame = 1
Query:    7 HEGTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKE--IQFPSWVTSRDRLLLRPSQXXXXXXXXXXXXDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVVDGSTTFK 534
            H+  ++  +   WLS  ++N  TCL+G +G+  K  E  L++   R    L   V       N +     R E  I  P W+T  D  L+                DG G Y+T+ EA+  AP++S  RYVIYVKKG Y            +M+VGDG+  TIITG  N + G TTF+
Sbjct:  142 HDAAAAGGNLKTWLSAAMSNQDTCLEGFEGTERKYEE--LIKGSLRQVTQLVSNVLDMYTQLNALPFKASRNESVIASPEWLTETDESLMMRHDPSVMHPNTVVAIDGKGKYRTINEAINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITGDRNFMQGLTTFR 317          
The following BLAST results are available for this feature:
BLAST of CX291281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PME1_FICAW5.239e-3750.00Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME21_SOLLC5.793e-3652.02Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME22_SOLLC2.201e-3551.45Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME1_SOLLC8.365e-3550.57Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME18_ARATH5.422e-3445.71Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME3_SOLLC2.975e-3247.65Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME42_ARATH1.133e-2334.88Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME19_ARATH5.624e-2336.42Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME30_ARATH1.809e-2135.23Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME22_ARATH1.809e-2133.71Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionC03006C02SK OF2 Citrus clementina cDNA clone C03006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291281 ID=CX291281; Name=CX291281; organism=Citrus clementina; type=EST; length=534bp
ATTCGGCACGAGGGGACAAGTTCCAACGAAGATGCGCATGCATGGCTAAG
TGGCGTTCTTACTAACCACGTCACGTGCTTGGACGGCCTAGATGGCTCAG
CTACGAAGTTGATGGAGCCAAGGCTCGTTGAGTTGATGGCAAGAGCTGCA
AATTCTCTAGCCATTTTAGTGGCAATTTCCCCATACAACACCAACGTCAT
CCAGCAATATTACTTGAGAAAAGAAATTCAATTTCCGTCGTGGGTGACAA
GCAGGGACCGGTTGCTTTTACGGCCTTCTCAGGCTGAAGCAGCTAAGGCC
AACGTTGTGGTGGCTAAGGATGGAAGTGGAAACTATAAGACTGTGAAAGA
GGCCGTGGCATCAGCACCAGACAACAGCAAGACAAGGTACGTTATTTATG
TGAAGAAAGGAACGTACAAAGAAAATGTCGAGGTGGGCAAGAAAAAGAAA
AATCTTATGATTGTTGGTGATGGCATGGATTTGACCATCATCACCGGCAG
CCTTAACGTCGTTGACGGATCTACAACCTTCAAA
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