CX291289

Overview
NameCX291289
Unique NameCX291289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig352 contig Ccv1_Contig352:2..564. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CX291289 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   40 IWCDNTSAASLASNPVFHARTKHIEIYIHFVREKIANGEQKVRYVLTKEQVADVLTKPLSCDHFRFLRDKL 252
            I+ DN    S+A+NP  H R KHI+I  HF RE++ N    + Y+ T+ Q+AD+ TKPL    F  LRDKL
Sbjct: 1328 IYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKL 1398
The following BLAST results are available for this feature:
BLAST of CX291289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPIA_DROME4.202e-1146.48Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03006C10SK OF2 Citrus clementina cDNA clone C03006C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291289 ID=CX291289; Name=CX291289; organism=Citrus clementina; type=EST; length=563bp
TTCGGCACGAGGGGAATGAAGCCAAAACAAAGACCAGTAATTTGGTGTGA
TAACACAAGTGCAGCATCCCTTGCCAGCAATCCAGTATTTCATGCCCGAA
CTAAACACATCGAAATTTATATACATTTCGTCAGAGAAAAAATTGCAAAT
GGTGAACAAAAAGTGAGATATGTACTAACAAAGGAACAAGTGGCAGATGT
TTTGACAAAACCCTTGAGTTGTGATCATTTCAGATTTTTAAGAGACAAGC
TTAAAGTCTCAAATAGACAGTTAAGCTTGAAGGGGGGAGTTAGAAAAGAG
TACAAGTCAGATGCCACATAATCGTGTGAAGCTGTCAAGCAATAACCTTG
AACACAAAGTAAGAATCTGTATTCAGGGAAGGAGATCAACAAGATTGTAA
ATACGAGAAGAATAATCTCATGAAAATATTGTATAATTAAATGGTGATTC
TTGCCATGTAAACACTTACCATGTGAAGTATCTAGCCATGCATGTAAATA
GCATAACTCTATACAAAGAACGTGCATAGCAATAAAAAAGCTATTCCTTT
AAGAATTTTATCT
back to top