CX291300

Overview
NameCX291300
Unique NameCX291300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291300_ssr520 microsatellite CX291300_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 7.018e-86
Identity = 156/165 (94.55%), Postives = 163/165 (98.79%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 507
            +FDL+GIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGK+EKITITNDKGRLSQEEI+RMVREAEEFAEEDKKVKEKIDARN+LETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG G
Sbjct:  490 KFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKAEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGG 654          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 9.166e-86
Identity = 157/166 (94.58%), Postives = 163/166 (98.19%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 510
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEI+RMVREAEEFAEEDKKVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG G+
Sbjct:  114 KFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGS 279          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.197e-85
Identity = 156/166 (93.98%), Postives = 163/166 (98.19%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 510
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEI+RMVREAEEFAEEDKKVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEA+CNPIITAVYQRSGGAPG G+
Sbjct:  114 KFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQRSGGAPGGGS 279          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.911e-83
Identity = 152/167 (91.02%), Postives = 162/167 (97.01%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQEEI+RMV+EAEEFAEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG  +E
Sbjct:  490 KFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGASE 656          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 9.485e-83
Identity = 151/163 (92.64%), Postives = 160/163 (98.16%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 501
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQEEI+RMV+EAEEFAEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  117 KFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 279          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 9.485e-83
Identity = 151/163 (92.64%), Postives = 160/163 (98.16%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 501
            +FDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQEEI+RMV+EAEEFAEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  491 KFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 653          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 4.707e-82
Identity = 147/167 (88.02%), Postives = 162/167 (97.01%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            +FDL+G+PPAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITN+KGRLSQEEIDRMV+EAEEFAEEDKKVKEKIDARN+LETYVYNMKNQ++DKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAPGAG E
Sbjct:  489 KFDLTGVPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGAGGE 655          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.336e-81
Identity = 149/168 (88.69%), Postives = 162/168 (96.43%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP-GAGTE 513
            +FDL+GIPPAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITN+KGRLSQEEIDRMV+EAEEFAEEDKKVKEKIDARN+LETYVYNMKNQ+NDKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAP GAG E
Sbjct:  489 KFDLNGIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGGAGGE 656          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 5.205e-81
Identity = 150/158 (94.94%), Postives = 154/158 (97.47%), Query Frame = 1
Query:   37 PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 510
            PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEI+RMVREAEEFAEEDKKVKE+IDARN LETYVYNMKNQINDKDKLADKLESDEK+KIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA G  +
Sbjct:    1 PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGASGGSS 158          
BLAST of CX291300 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 5.205e-81
Identity = 146/167 (87.43%), Postives = 159/167 (95.21%), Query Frame = 1
Query:   13 EFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 513
            +FDL+GIP APRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN+KGRLSQEEIDRMVREAEEFAEEDKKVKE+IDARN LETYVYNMKN + DKDKLADKLE++EK+K+E A+KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPI++AVYQRSGGAPG   +
Sbjct:  487 KFDLNGIPSAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDAD 653          
The following BLAST results are available for this feature:
BLAST of CX291300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP_SOLLC7.018e-8694.55Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP2_TOBAC9.166e-8694.58Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC1.197e-8593.98Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
BIP5_TOBAC1.911e-8391.02Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP8_TOBAC9.485e-8392.64Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC9.485e-8392.64Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP2_ARATH4.707e-8288.02Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH2.336e-8188.69Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP3_TOBAC5.205e-8194.94Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
BIP3_MAIZE5.205e-8187.43Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC03006D12SK OF2 Citrus clementina cDNA clone C03006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291300 ID=CX291300; Name=CX291300; organism=Citrus clementina; type=EST; length=574bp
ATTCGGCACGAGGAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGG
AACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAA
ATGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATC
ACAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGATCGTATGGTTCG
TGAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCG
ATGCTCGCAACAGCCTTGAGACCTATGTCTATAACATGAAAAACCAGATT
AATGACAAGGACAAGCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAA
GATTGAAACTGCTGTAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGA
GTGCAGAGAAAGAGGACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTT
TGCAACCCCATCATCACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGG
TGCTGGCACTGAATCATCGGATGATGATGATTCACACGATGAGCTCTAAA
GAATCTTTACTTCGATTGACCATA
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