CX291305

Overview
NameCX291305
Unique NameCX291305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3132 contig Ccv1_Contig3132:291..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 1.547e-73
Identity = 137/159 (86.16%), Postives = 152/159 (95.60%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 478
            MKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDS KDIELIITELQKNPLNYTQVSV+AD ILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VE
Sbjct:   68 MKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVE 226          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.074e-66
Identity = 121/159 (76.10%), Postives = 146/159 (91.82%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 478
            MKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDS  DI L +TEL KNPLNY QVSVLAD ILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E
Sbjct:   65 MKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIE 223          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 51/173 (29.48%), Postives = 89/173 (51.45%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SXKDIELIITELQKNPLNYTQVSVLADXILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 460
            M+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  ++Y     +A  +L      EFD   I Y+KF +VVS +PT   ++
Sbjct:   24 MQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQII 194          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.598e-12
Identity = 51/149 (34.23%), Postives = 81/149 (54.36%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKN-VEFDALRIIYSKFHSVVSF 436
            MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A  +L +  EFD   II+++F SV+S+
Sbjct:   48 MKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISY 196          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.874e-12
Identity = 49/171 (28.65%), Postives = 82/171 (47.95%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 460
            MKMVAASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K + +L R+    I     ++ +  L++     +   +L+     EFD   +IY+KF S ++ + T   V+
Sbjct:   24 MKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVATVIYNKFRSAITQVVTAQQVI 194          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.874e-12
Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPEL 472
            M+MVAA+KLR  Q  AEN+R   +   A+LG+     TP  +  +          +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL R+    I  +I       L +     + + +L      EFD   + YS+F SV++ +PT   ++  E+
Sbjct:   24 MQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPTAQQIIPAEI 198          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.874e-12
Identity = 51/176 (28.98%), Postives = 86/176 (48.86%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKN-PLNYTQVSVLADXILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPEL 472
            M+MVAA+KLR  Q  AEN R   +    +LG+               T T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R   +D  +   +++ N P++Y   + +AD IL   E   FD   + YS+F SV+S +PT   ++  EL
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVL-RRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAEL 198          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKN-VEFDALRIIYSKFHSVVSF 436
            MKMVAA+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+IL R       +   ++ + P  +   SV+A  +L +  EFD   II+++F SV+S+
Sbjct:   23 MKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISY 171          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKN-VEFDALRIIYSKFHSVVSF 436
            MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A  +L +  EFD   II++KF SV+S+
Sbjct:   48 MKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISY 196          
BLAST of CX291305 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSXKDIELIITELQKNPLNYTQVSVLADXILKN-VEFDALRIIYSKFHSVVSF 436
            MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A  +L +  EFD   II++KF SV+S+
Sbjct:   48 MKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISY 196          
The following BLAST results are available for this feature:
BLAST of CX291305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ATPG3_IPOBA1.547e-7386.16ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH1.074e-6676.10ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_ROSDO1.989e-1229.48ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_BOVIN2.598e-1234.23ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_RHOCS9.874e-1228.65ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_METNO9.874e-1226.86ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_METEP9.874e-1228.98ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_RAT1.290e-1132.89ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]
ATPG_HUMAN1.290e-1132.89ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_PONAB1.684e-1132.89ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionC03006E05SK OF2 Citrus clementina cDNA clone C03006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291305 ID=CX291305; Name=CX291305; organism=Citrus clementina; type=EST; length=480bp
TATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAGCTG
AAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGACACT
CCCACTGTTGATGCTAAAAAGAATGTTATTGTGACCATCTCTTCTGACAA
AGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGAGTT
TGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATCTTG
GGAGAGAAGGCAAAGGCAATATTAGTACGTGACTCANAGAAAGATATTGA
ACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCCAGGTTT
CCGTTCTTGCAGATNATATCTTAAAGAATGTAGAATTTGATGCTTTGAGG
ATTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAATGGC
AACTGTATTATCGCCTGAGCTTGTGGAGAG
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