CX291317

Overview
NameCX291317
Unique NameCX291317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14943 contig Ccv1_Contig14943:601..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.111e-88
Identity = 160/174 (91.95%), Postives = 161/174 (92.53%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.111e-88
Identity = 160/174 (91.95%), Postives = 161/174 (92.53%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.111e-88
Identity = 160/174 (91.95%), Postives = 161/174 (92.53%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.111e-88
Identity = 160/174 (91.95%), Postives = 161/174 (92.53%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.111e-88
Identity = 160/174 (91.95%), Postives = 161/174 (92.53%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.111e-88
Identity = 160/174 (91.95%), Postives = 161/174 (92.53%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 1.787e-87
Identity = 159/174 (91.38%), Postives = 160/174 (91.95%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 4.402e-86
Identity = 158/175 (90.29%), Postives = 160/175 (91.43%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSL-DIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSL DIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:   72 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLLDIERPTYTNLNRLVSQIISSLTTSLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 246
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 5.750e-86
Identity = 154/174 (88.51%), Postives = 159/174 (91.38%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
[Close]
BLAST of CX291317 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 5.750e-86
Identity = 154/174 (88.51%), Postives = 159/174 (91.38%), Query Frame = 3 
Query:    3 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 524
            LSVDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA
Sbjct:  157 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNA 330
The following BLAST results are available for this feature:
BLAST of CX291317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 416
Match NameE-valueIdentityDescription
TBA_AVESA2.111e-8891.95Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA6_MAIZE2.111e-8891.95Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE2.111e-8891.95Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN2.111e-8891.95Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ2.111e-8891.95Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU2.111e-8891.95Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA3_ARATH1.787e-8791.38Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA2_ANEPH4.402e-8690.29Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA_PRUDU5.750e-8688.51Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA4_GOSHI5.750e-8688.51Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC03006F06SK OF2 Citrus clementina cDNA clone C03006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291317 ID=CX291317; Name=CX291317; organism=Citrus clementina; type=EST; length=524bp
GCCTATCTGTAGATTATGGAAAGAAGTCAAAGCTTGGCTTCACTATCTAC
CCTTCTCCTCAGGTATCAACAGCAGTTGTGGAGCCTTATAACAGTGTTCT
GTCTACTCATTCCCTTCTTGAACACACAGATGTTGCTGTGCTATTGGACA
ATGAAGCTATTTATGACATCTGCAGGAGATCCCTAGATATTGAGAGGCCA
ACTTACACTAATTTGAATCGATTGATATCTCAAATCATATCATCTTTGAC
AACTTCATTGAGGTTTGATGGAGCTATTAATGTTGATATTACAGAGTTCC
AGACCAACCTTGTACCGTATCCTCGTATCCATTTCATGCTTTCATCATAT
GCCCCTGTCATCTCTGCTGAAAAAGCATACCATGAACAGCTTTCAGTTCC
AGAGATCACAAATGCAGTCTTTGAGCCCTCAAGCATGATGGCCAAATGTG
ACCCCAGGCACGGGAAGTACATGGCTTGCTGCTTGATGTACCGAGGAGAT
GTTGTCCCCAAGGATGTTAATGCC
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