CX291322

Overview
NameCX291322
Unique NameCX291322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:345..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 9.009e-74
Identity = 124/174 (71.26%), Postives = 147/174 (84.48%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMYK 532
            G++++FVG EV PWSKT                  HRVMT++PRYDQYKDAWDT+V++E+KVGDKIE VRFFHC+KRGVDRVFVDHP FL +VWGKT SK+YGP+TG DY+DNQLRFSLLCQAALEAPR+LNLNS+KYFSGPYGEDV+FVANDWH++LIP YLK+MYK +G+YK
Sbjct:   76 GMSLVFVGAEVGPWSKTGGLGDVLGGLPPVLAGNGHRVMTVSPRYDQYKDAWDTNVLVEVKVGDKIETVRFFHCYKRGVDRVFVDHPLFLERVWGKTGSKLYGPKTGIDYRDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVIFVANDWHSALIPCYLKSMYKSRGLYK 249          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 5.839e-73
Identity = 126/173 (72.83%), Postives = 141/173 (81.50%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMY 529
            G+N++FV  EV PWSKT                  HRVMT++PRYDQYKDAWDT VV+E+KVGD IE VRFFHC+KRGVDRVFVDHP FL KVWGKT+SKIYGP  G DYQDNQLRFSLLCQAALEAPR+LNL S+KYFSGPYGEDVVFVANDWHT+L+P YLK+MY+ KGMY
Sbjct:   81 GMNLVFVLAEVGPWSKTGGLGDVVGGLPPAMAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSIETVRFFHCYKRGVDRVFVDHPIFLEKVWGKTKSKIYGPNAGTDYQDNQLRFSLLCQAALEAPRVLNLTSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSKGMY 253          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 8.432e-72
Identity = 122/174 (70.11%), Postives = 142/174 (81.61%), Query Frame = 2
Query:    8 RGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMY 529
            +G+N++FVGTEV PWSKT                  HRVMTI+PRYDQYKDAWDT V +E+KVGD IE VRFFHC+KRGVDRVFVDHP FL KVWGKT SKIYGP+ G DY DN+LRFSLLCQAALEAP++LNLNS+ YFSGPYGEDV+F+ANDWHT+LIP YLK+MY+ +G+Y
Sbjct:   79 KGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAARGHRVMTISPRYDQYKDAWDTSVAVEVKVGDSIEIVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPKAGLDYLDNELRFSLLCQAALEAPKVLNLNSSNYFSGPYGEDVLFIANDWHTALIPCYLKSMYQSRGIY 252          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.453e-71
Identity = 123/174 (70.69%), Postives = 143/174 (82.18%), Query Frame = 2
Query:    8 RGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMY 529
            +G++++F+G EV PWSKT                  HRVMTI PRYDQYKDAWDT VV+++KVGDK+E VRFFHC+KRGVDRVFVDHP FLAKV GKT SKIYGP TG DY DNQLRFSLLCQAALEAP++LNLNS+KYFSGPYGEDVVFVANDWHT+L+P YLK+MY+ +G+Y
Sbjct:   82 KGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVY 255          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 1.218e-70
Identity = 121/174 (69.54%), Postives = 141/174 (81.03%), Query Frame = 2
Query:    8 RGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMY 529
            +G+N++FVG EV PW KT                  HRVMT+ PRYDQYKDAWDT VV+EL+VGD+IE VRFFH +KRGVDRVFVDHP FL KVWGKT S +YGP+ G+DY+DNQLRFSLLCQAALEAPR+LNLNS+ YFSGPYGEDVVFVANDWHT+L+P YLKTMY+ +G+Y
Sbjct:   80 QGMNLVFVGCEVGPWCKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVELQVGDRIEPVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSMLYGPKAGKDYKDNQLRFSLLCQAALEAPRVLNLNSSNYFSGPYGEDVVFVANDWHTALLPCYLKTMYQSRGIY 253          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.713e-70
Identity = 120/174 (68.97%), Postives = 139/174 (79.89%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMYK 532
            G+N++FVG EV PWSKT                  HRVMT++PRYDQYKDAWDT V +E+K+GD+IE VRFFH +KRGVDRVFVDHP FL KVWGKT SKIYGPR G DYQDNQLRFSLLC AALEAPR+LNLNS+K FSGPYGE+V F+ANDWHT+L+P YLK +Y+P G+YK
Sbjct:   81 GMNLIFVGAEVGPWSKTGGLGDVLGGLPPAMAARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRIETVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPRAGLDYQDNQLRFSLLCLAALEAPRVLNLNSSKNFSGPYGEEVAFIANDWHTALLPCYLKAIYQPMGIYK 254          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.646e-67
Identity = 115/174 (66.09%), Postives = 135/174 (77.59%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMYK 532
            G+N++FVG E+APWSKT                  HRVM ++PRYDQYKDAWDT V+ E+KV D+ E+VRFFHC+KRGVDRVF+DHPWFL KV GKT+ KIYGP  G DY+DNQ RFSLLCQAALEAPRILNLN+N YFSGPYGEDVVFV NDWHT L+  YLK+ Y+  G+Y+
Sbjct:   75 GMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVISEIKVADEYERVRFFHCYKRGVDRVFIDHPWFLEKVRGKTKEKIYGPDAGTDYEDNQQRFSLLCQAALEAPRILNLNNNPYFSGPYGEDVVFVCNDWHTGLLACYLKSNYQSNGIYR 248          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.807e-67
Identity = 116/174 (66.67%), Postives = 138/174 (79.31%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMYK 532
            G+ I+FV TEV PW KT                  HRVMTIAPRYDQYKD WDT+V++E+ VGD+ E VRFFHC+KRGVDRVFVDHP FL KVWGKT SK+YGP TG D++DNQLRF LLC AALEAPR+LNLN+++YFSGPYGE+VVFVANDWHT+++P YLK+MYK  G+Y+
Sbjct:   37 GMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYE 210          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.788e-67
Identity = 116/174 (66.67%), Postives = 133/174 (76.44%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMYK 532
            G+N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT  KIYGP TG DY+DNQ+RFSLLCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y+
Sbjct:   82 GMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYR 255          
BLAST of CX291322 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 4.788e-67
Identity = 116/174 (66.67%), Postives = 133/174 (76.44%), Query Frame = 2
Query:   11 GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPWYLKTMYKPKGMYK 532
            G+N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT  KIYGP TG DY+DNQ+RFSLLCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y+
Sbjct:   82 GMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYR 255          
The following BLAST results are available for this feature:
BLAST of CX291322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SSG1_PEA9.009e-7471.26Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA5.839e-7372.83Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU8.432e-7270.11Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH2.453e-7170.69Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_IPOBA1.218e-7069.54Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES2.713e-7068.97Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU1.646e-6766.09Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU2.807e-6766.67Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_ORYSJ4.788e-6766.67Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI4.788e-6766.67Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionC03006F11SK OF2 Citrus clementina cDNA clone C03006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291322 ID=CX291322; Name=CX291322; organism=Citrus clementina; type=EST; length=533bp
ATTGGCACGAGGCCTGAATATCCTCTTTGTTGGAACAGAGGTTGCTCCTT
GGAGTAAAACTGGGGGACTTGGTGATGTTCTTGGAGGTCTGCCACCAGCA
CTGGCCGCCAATGGGCACCGTGTCATGACGATTGCACCCCGATATGACCA
GTACAAAGATGCTTGGGATACTGATGTTGTAATTGAGCTGAAAGTTGGAG
ACAAAATTGAAAAAGTTCGCTTCTTTCATTGCCACAAGAGAGGAGTTGAT
CGGGTGTTTGTGGATCATCCTTGGTTTCTTGCGAAGGTGTGGGGTAAAAC
CCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACCAGGACAACC
AACTTCGCTTCAGCTTGTTGTGCCAGGCAGCTCTTGAAGCACCGAGAATT
CTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGGTGAAGATGT
CGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTTGGTACCTGA
AAACTATGTATAAGCCCAAAGGGATGTACAAAA
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