CX291327

Overview
NameCX291327
Unique NameCX291327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig352 contig Ccv1_Contig352:14..564. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CX291327 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   28 IWCDNTSAASLASNPVFHARTKHIEIYIHFVREKIANGEQKVRYVLTKEQVADVLTKPLSCDHFRFLRDKL 240
            I+ DN    S+A+NP  H R KHI+I  HF RE++ N    + Y+ T+ Q+AD+ TKPL    F  LRDKL
Sbjct: 1328 IYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKL 1398
The following BLAST results are available for this feature:
BLAST of CX291327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPIA_DROME3.984e-1146.48Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
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Properties
Property NameValue
Genbank descriptionC03006G04SK OF2 Citrus clementina cDNA clone C03006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291327 ID=CX291327; Name=CX291327; organism=Citrus clementina; type=EST; length=551bp
GGAATGAAGCCAAAACAAAGACCAGTAATTTGGTGTGATAACACAAGTGC
AGCATCCCTTGCCAGCAATCCAGTATTTCATGCCCGAACTAAACACATCG
AAATTTATATACATTTCGTCAGAGAAAAAATTGCAAATGGTGAACAAAAA
GTGAGATATGTACTAACAAAGGAACAAGTGGCAGATGTTTTGACAAAACC
CTTGAGTTGTGATCATTTCAGATTTTTAAGAGACAAGCTTAAAGTCTCAA
ATAGACAGTTAAGCTTGAAGGGGGGAGTTAGAAAAGAGTACAAGTCAGAT
GCCACATAATCGTGTGAAGCTGTCAAGCAATAACCTTGAACACAAAGTAA
GAATCTGTATTCAGGGAAGGAGATCAACAAGATTGTAAATACGAGAAGAA
TAATCTCATGAAAATATTGTATAATTAAATGGTGATTCTTGCCATGTAAA
CACTTACCATGTGAAGTATCTAGCCATGCATGTAAATAGCATAACTCTAT
ACAAAGAACGTGCATAGCAATAAAAAAGCTATTCCTTTAAGAATTTTATC
T
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