CX291334

Overview
NameCX291334
Unique NameCX291334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10189 contig Ccv1_Contig10189:20..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291334 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.023e-26
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  128 MKGGRSKADAXXTDSKL----KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENE 496
            MKGG+SK ++   D KL    K    +A K                  SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E E
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEE 127          
BLAST of CX291334 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.887e-26
Identity = 65/123 (52.85%), Postives = 79/123 (64.23%), Query Frame = 2
Query:  128 MKGGRSKADAXXTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENE 496
            MKGG+SKA +   D+KL  K  +A                    SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE E
Sbjct:    1 MKGGKSKAKS---DNKLAVK-KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEE 117          
BLAST of CX291334 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.984e-25
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  128 MKGGRSKADAXXTDSKL--KSKGARA---GKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 463
            MKGG+SK ++   ++KL    KGA A   GK+                 SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL 117          
BLAST of CX291334 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 2
Query:  128 MKGGRSKADAXXTDSKL--KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENE 496
            MKG +SK  A   D+KL  KSKGA    +                 SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A   E
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKE 124          
BLAST of CX291334 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.501e-21
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 2
Query:  128 MKGGRSKADAXXTDSKL--KSKGA-RAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 457
            MKG +SK  A   D+KL  KSKGA +   +                 SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YNK
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112          
The following BLAST results are available for this feature:
BLAST of CX291334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN2.023e-2648.03HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI5.887e-2652.85HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA4.984e-2550.43HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE2.735e-2348.80DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.501e-2151.33HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC03006G11SK OF2 Citrus clementina cDNA clone C03006G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291334 ID=CX291334; Name=CX291334; organism=Citrus clementina; type=EST; length=497bp
TTTGTCTTCCAAAAACCCTAACCTCACCAGGTAACTCGCTGAGTCTCTCC
GGCGCTGACTCAGTCCGAGTCGCCCCGATTTTCACCGATTCTCACCGGTT
TGCATCATTTTTAGTGCAGGATTCATCATGAAAGGAGGCAGATCGAAAGC
TGACGCCNTANGAACTGATAGCAAGCTGAAGAGCAAAGGGGCGAGAGCCG
GCAAGCGAACAGCGAANCCCAAGGCTGCGAAAGATCCAAACAAGCCGAAG
AGGCCTCCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTT
CAAAGAAGCTCATCCTAACAATAAATCTGTTGCTACTGTTGGCAAAGCTG
CTGGAGAAAAATGGAAGTCAATGTCAGAAGATGAGAAAGCGCCATTCGTT
GAAAGGGCTGAGAAAAGAAAGTCTGATTACAACAAGAACATGCAGGATTA
CAACAAGCAGTTGGCTGATGGAGTAAATGCTGCTGAGGAAAATGAAT
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