CX291358

Overview
NameCX291358
Unique NameCX291358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14976 contig Ccv1_Contig14976:92..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291358 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.179e-21
Identity = 58/105 (55.24%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 RLHKLTLRTTSH----LAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAE 304
            R   L  R  +H    LAAFH QSHLF    P        + S +  IFLPHLVASMEQVEETYIM+KPDGVQRGLVG+IISRFE             CPK+LAE
Sbjct:   26 RHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAE 130          
BLAST of CX291358 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   38 LAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAE 304
            LAAF PQ  LF +     +R+  A +S E+GIFLPHLVASME VEETYIMVKPDG+QRGLVG+IISRFE            QCPK+LAE
Sbjct:   41 LAAFRPQFRLFSR-NSASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAE 128          
BLAST of CX291358 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.850e-21
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   20 LRTTSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAE 304
            ++   HLAAF P  HLF        R   ++ ++ T IFLPHLVASME+VEETYIM+KPDGVQRGLVG+IISRFE             CPK+LAE
Sbjct:   38 IKKNHHLAAFQPAVHLFASNQ---SRSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAE 129          
BLAST of CX291358 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.192e-19
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 2
Query:   20 LRTTSHLAAFHPQSHLFVKFPPCPQRKTV--ARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAE 304
            LRTT +L+AF  +SHLF               R+S E+GIFLP L+ S+EQV++ YIMVKPDGVQRGLVG+IISRFE            QC K+LAE
Sbjct:   31 LRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAE 127          
The following BLAST results are available for this feature:
BLAST of CX291358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NDK2_SPIOL1.179e-2155.24Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH1.539e-2161.80Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_TOBAC5.850e-2154.74Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA4.192e-1952.58Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionC03007A12SK OF2 Citrus clementina cDNA clone C03007A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291358 ID=CX291358; Name=CX291358; organism=Citrus clementina; type=EST; length=564bp
GAGGCTCCACAAGCTTACCCTGCGCACCACCAGCCACCTTGCAGCATTCC
ACCCACAGTCCCATCTTTTCGTAAAATTCCCACCATGTCCTCAACGCAAA
ACAGTTGCTCGCAACTCCAACGAAACCGGCATCTTCCTTCCCCACTTGGT
CGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGAAACCAGATG
GTGTTCAACGTGGTCTGGTTGGCGACATTATTTCAAGGTTTGAGAAGAAG
GGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAAAGATTTAGC
TGAGGCCTGTTGTTGGGAGTATTTATATTCCAGTTTTTGTTATTCGTGAA
GATATGCTCAACCAACATTTTTCACATACTTCAGAAGTTAGATAATGCTT
ATTCCTGTGTTTATAATTCAAAGCAAACCAGAAGTTTTTCGCCCTATTAT
ATAAGTGCTATGACCTCGTTCATTTCATGAAAATAAAGCATGTTGCTCTA
TTTTATTGTTGATAAAATAGAACTTGAGAATAATTTCCTACTATAAAAAA
AAAAAAAAAAAAAA
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