CX291364

Overview
NameCX291364
Unique NameCX291364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291364_ssr10 microsatellite CX291364_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig357 contig Ccv1_Contig357:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291364 vs. ExPASy Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.088e-45
Identity = 99/164 (60.37%), Postives = 116/164 (70.73%), Query Frame = 2 
Query:  149 MGNTIGGRRK-AKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEPRQQLKPKKVYFLVELPKLPDEEKIT--------RRVRSGIQMSAKDRLECLMLSRRAVSDLTAVNVRSSHGSEVARGPGTGQMRVKMRLPRAQVEKLMEESAND 613
            MGN+I  +RK AKVMKIDGET ++KTP+ A EV  DYPGYVLLDS+AVKHFG+R+KPLEP Q LKPKK YFLVELPKLP E            RRV SGI + AK+RL+ LMLSRR VSD+T    RS  G       G G   V++RLPR+Q+ KLMEE+ ND
Sbjct:    1 MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVTI--GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNND 162
The following BLAST results are available for this feature:
BLAST of CX291364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1648_ARATH9.088e-4560.37Uncharacterized protein At1g66480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC03007B07SK OF2 Citrus clementina cDNA clone C03007B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291364 ID=CX291364; Name=CX291364; organism=Citrus clementina; type=EST; length=617bp
CACTTGTGAAATCAATCAATCAATTATATCCTTTCAATAACACAATAATC
CCAAAGAATTTCCTCAGATTCACACCTCACGAAATTTGCATTTAAATTGC
AAATCATAATTAACAAGCTCCAACGCATTCAAAATAAAGTATTAAGATAT
GGGGAACACAATAGGTGGAAGAAGGAAAGCAAAAGTGATGAAGATTGATG
GAGAAACAATAAAATTAAAGACTCCAATTCAGGCTAGTGAAGTTGTTAAA
GACTACCCAGGTTATGTTCTATTGGATTCAGAAGCTGTGAAGCATTTTGG
CATTAGGGCAAAACCCTTGGAGCCACGGCAACAACTTAAGCCCAAGAAAG
TATATTTCTTGGTGGAGCTGCCCAAGCTTCCTGATGAGGAAAAGATCACG
AGAAGAGTGCGTTCTGGGATTCAGATGAGCGCTAAGGACAGGCTCGAGTG
CTTGATGCTGTCAAGGAGGGCGGTTTCGGATCTTACTGCGGTTAATGTAA
GGTCGAGCCACGGCAGTGAGGTGGCACGGGGACCGGGGACGGGTCAGATG
AGGGTCAAAATGAGGCTGCCTAGGGCTCAAGTTGAGAAGCTGATGGAAGA
GAGTGCAAATGATGGAG
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