CX291365

Overview
NameCX291365
Unique NameCX291365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig941 contig Ccv1_Contig941:215..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.520e-39
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = -3
Query:  331 KELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 645
            ++LK +ET+LEKGISRIRSKKNELLFAEIEYMQK+E+DLHN+NQ LRAKIAENER QQ+MNLM G S YE+   Q FD R+Y Q+N LQP NHY RQDQ ALQLV
Sbjct:  138 RDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPGSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQDQTALQLV 242          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = -3
Query:  331 NMQNQTET-CG*ITKWVNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEII-QSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 699
            N+QNQ     G     +N ++L+N+E ++EKGIS+IR+KKNELLFAEIEYMQKRE+DLHN+NQ LRAKIAE ER QQ MNLM G SSY+++   Q FD+R+Y QVN LQ  NHYPRQDQ  LQLV
Sbjct:  119 NLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQ-MNLMPGSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQDQPPLQLV 242          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 84/133 (63.16%), Postives = 100/133 (75.19%), Query Frame = -3
Query:  331 NMQNQTETCG*ITKWVNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEII------QSQPFDSRSYFQVNALQPTNHY----PRQDQMALQLV 699
            N Q   ET G ++     KEL+N+E RLE+ I+RIRSKKNELLF+EI+YMQKREVDLHN NQ+LRAKIAENER   +++LM GGS+YE +      QSQPFDSR+YFQV ALQP NH+     RQDQ ALQLV
Sbjct:  124 NRQLMGETIGSMSP----KELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV 252          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.908e-36
Identity = 84/133 (63.16%), Postives = 99/133 (74.44%), Query Frame = -3
Query:  331 NMQNQTETCG*ITKWVNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEII------QSQPFDSRSYFQVNALQPTNHY----PRQDQMALQLV 699
            N Q   ET G ++     KEL+N+E RL++ ++RIRSKKNELLFAEI+YMQKREVDLHN NQLLRAKIAENER   +M+LM GGS+YE I      Q QPFDSR+YFQV ALQP NH+     R+DQ ALQLV
Sbjct:  124 NRQLMGETIGSMSP----KELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHHYSSAGREDQTALQLV 252          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = -3
Query:  331 NMQNQTETC-G*ITKWVNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG-----QQNMNLMQGGSSYEII-QSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 699
            N+QNQ     G     ++ ++LKN+E ++EKGIS+IRSKKNELLFAEIEYMQKRE+DLHN+NQ LRAKIAE ER      QQ MNLM G SSYE++     FD+R+Y QVN LQ  NHY RQDQ +LQLV
Sbjct:  119 NLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQDQPSLQLV 248          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 83/130 (63.85%), Postives = 95/130 (73.08%), Query Frame = -3
Query:  331 NMQNQTETC-G*ITKWVNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQ---QNMNLMQGGSS--YEII-QSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 699
            N+ NQ     G     +  KELKN+E R+EKGIS+IRSKKNELLFAEIEYMQKREVDLHN+NQ LRAKIAE ER Q   Q MNLM G SS  +E++   Q FD+R+Y QVN LQ  NHYPRQDQ  +QLV
Sbjct:  119 NLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHYPRQDQPPIQLV 248          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 55/104 (52.88%), Postives = 79/104 (75.96%), Query Frame = -3
Query:  349 VNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSS--YEIIQSQPFDSRSYFQVNALQPTNHYPRQDQ 654
            ++ ++LK +E RLEKGI++IR++KNELL+AE+EYMQKREV+L N N  LR+K+ ENERGQQ +N+M   S+  Y+ + + P+DSR++ QVN +Q   HY  Q Q
Sbjct:  120 MSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQ 223          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = -3
Query:  331 VNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER---GQQNMNLMQGGSSYEI-----IQSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 654
            +NFKELKN+E RLEKGISR+RSKKNELL AEIEYMQKRE++L ++N  LRAKIAE  R    QQ  +++QG + YE       QSQ + +R+Y  VN L+P   +  QDQ  LQLV
Sbjct:  134 LNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQGTTVYESGVSSHDQSQHY-NRNYIPVNLLEPNQQFSGQDQPPLQLV 248          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 53/118 (44.92%), Postives = 79/118 (66.95%), Query Frame = -3
Query:  352 NMQNQTETC-G*ITKWVNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQ-PFDSRSYFQVNALQPTNHYPRQD 699
            N+QN   T  G     +N +ELK +E RL+KG+ +IR++KNELL AEIEYMQ+RE +L N N  L++K+AE+ERG Q +N+M   S+ E +Q+   +D R++ Q N +    +YP Q+
Sbjct:  145 NLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQE 262          
BLAST of CX291365 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = -3
Query:  331 VNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE-RGQQNMNLMQGGSSYEIIQSQPFDS----RSYFQVNALQPTNHYPRQDQMALQLV 654
            +NFKELKN+E+RLEKGISR+RSKK+E+L AEIEYMQKRE++L N N  LR+KI E     QQ  +++  G+ YE   +    S    R+Y  VN L+P  +   QDQ  LQLV
Sbjct:  134 LNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQDQPPLQLV 246          
The following BLAST results are available for this feature:
BLAST of CX291365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AG_PANGI2.520e-3974.29Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_PETHY8.962e-3764.00Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_ARATH7.586e-3663.16Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_BRANA9.908e-3663.16Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_TOBAC2.207e-3561.54Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC2.883e-3563.85Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MADS3_ORYSJ5.449e-2652.88MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL1_ARATH7.869e-2556.90Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD58_ORYSJ1.641e-2244.92MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL5_ARATH2.143e-2252.21Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC03007B08SK OF2 Citrus clementina cDNA clone C03007B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291365 ID=CX291365; Name=CX291365; organism=Citrus clementina; type=EST; length=701bp
GATTCGGCCGAGGTTTTTCTTTTTTTTTTCTAAGCATTAATATCATATTC
GAAATTAATATCAAATGCAGAGACTTTGTGTTTGCATTACGCATACAGAA
TATGAATTTCATGGCTGACAAACATATATATAATATTTATGAGTCTTAAA
ATAGTTTATATAGCTACTAGCTTAGGCCCCTGATGATCACTTAATTAAGC
AAAGTTGATTTCTTCGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGC
ACACCTTTTATCTAGAATGAAGTAATAGCTAGATACCCTCCATAGGATAT
GACACGGCAGAATATTCTTCAAACATATTAAACTAACTGAAGGGCCATCT
GATCCTGGCGTGGGTAATGATTGGTGGGCTGTAATGCATTGACTTGGAAA
TAGCTCCGGGAATCAAATGGCTGAGACTGTATAATCTCGTAGCTACTCCC
TCCTTGCATCAAATTCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCT
TTGCTCGGAGAAGCTGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGC
ATGTACTCAATTTCTGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCT
GCTAATACCTTTCTCTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAAT
TTACCCACTTAGTGATTCACCCACATGTTTCTGTTTGATTTTGCATATTG
C
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