CX291368

Overview
NameCX291368
Unique NameCX291368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291368_ssr45 microsatellite CX291368_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 2
Query:   74 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673
            +  +  L +KL NG  E +  AA ++R + K++ +  R   A AG +  LV +L SP+    E S+ ALLNL++ NE NK  I  AGAI  +VE+LK  +   RE                           L+ +L  G+ +G+ DA TA+  L   + N S  V    V PL  LLKD        ++A A+L ILS+
Sbjct:  344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRN-VDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAG--GGMVDEALAILAILST 539          
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 61/207 (29.47%), Postives = 105/207 (50.72%), Query Frame = 2
Query:   53 EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673
            ++ N++K   +  L + L +  LE +  + + +R + +++  + R   A AG +  LV +L  P+    E+++  LLNL++ +E NK  I+  GAIP ++E+L+  N   RE                           LV +L  G+++G+ DA+TAL  LS    N    +DA  V PL+NLLKD  K     ++A ++L +L+S
Sbjct:  372 DSQNEQKDE-VSLLVEALSSSQLEEQRRSVKQMRLLARENP-ENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSI-DEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKD--KNLGMIDEALSILLLLAS 573          
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 58/197 (29.44%), Postives = 103/197 (52.28%), Query Frame = 2
Query:   83 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673
            +++L ++L +  L+T+ +A  ++R ++ K ++  R     +G +  LV +L S +    E+++ ALLNL++ N+ NK  IA AGAI PL+ +L+  +   +E                           LV +L +G+ +G+ DA TAL  LS  +EN + IV + AV  LI+L+      +   +KA A+L  L++
Sbjct:  543 VKKLVEELKSSSLDTQRQATAELR-LLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA---AGMVDKAVAVLANLAT 734          
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 59/198 (29.80%), Postives = 93/198 (46.97%), Query Frame = 2
Query:   83 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673
            I  L  KL +  +E +  A  +IR + K+S+   R   A AG +  LV +L S  + +  E+++  +LNL++  E NK  I  AGA+  +V +L+  +   RE                           LV +L  GSV+G+ DA TAL  L   + N    V A  V PL+ +L D     + A++A  +L +L+S
Sbjct:  343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRST-DNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIY-EHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSS-ERMADEALTILSVLAS 537          
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 61/200 (30.50%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   83 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL---LVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673
            +++L D L +  L+T+ EA   IR ++ ++S   R   A    +  LV +L S +      ++  LLNL++ N+ NK  IA +GAI PL+ +LK   G L E                              LV +L SGS+ G+ DA TAL  LS   EN + +++A AV  L+ L+          EKA  +L  L++
Sbjct:  423 VKKLIDDLKSSSLDTQREATARIR-ILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA---FGMVEKAVVVLANLAT 615          
The following BLAST results are available for this feature:
BLAST of CX291368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PUB14_ARATH3.065e-1533.00U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB15_ARATH4.426e-1429.47U-box domain-containing protein 15 OS=Arabidopsis ... [more]
PUB4_ARATH2.869e-1329.44U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB10_ARATH1.574e-1129.80U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB2_ARATH4.580e-1130.50U-box domain-containing protein 2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC03007B11SK OF2 Citrus clementina cDNA clone C03007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291368 ID=CX291368; Name=CX291368; organism=Citrus clementina; type=EST; length=673bp
AGCCATGGGGCATGAAGAGAACAAAAACAAAGCGGCGACAGACCAAGAAG
AAGAAGCATGGAACCAAAGGAAGCAAGCTCTTATTGAGGAATTATCAGAC
AAGTTAATAAATGGAGATCTTGAGACCAAAATAGAAGCAGCTAGAGATAT
CAGAAAAGTTGTTAAAAAGTCATCTTTAAAGACAAGATCAGAGTTTGCAG
CTGCTGGTGTGGTTCAACCTTTGGTGTTGATGCTTGTTTCTCCTAATCTT
GATGCCATTGAATCCTCTCTCCTTGCCCTCCTCAATCTCGCTGTTAGAAA
TGAACGAAACAAAGTCAAGATAGCAACAGCCGGCGCCATCCCCCCACTTG
TGGAGCTTCTTAAGTTCCAAAATGGTACGTTGAGGGAATTAGCCGCAGCC
GCGATCTTAACTCTCTCAGCTGCTGCACCCAATAAGCCAGCCATTGCTGC
TTCTGGAGCTGCACCTCTTCTGGTACAGATTCTCCACTCTGGAAGTGTTC
AGGGAAGAGTTGATGCTGTTACAGCCCTACACTATCTCTCCACCTGTAAA
GAGAATTCCAGTCCAATTGTAGATGCTACAGCGGTTCCCCCTTTAATCAA
TCTTCTGAAAGATTGCAAGAAATATTCAAAGTTTGCTGAGAAGGCTACAG
CATTGCTTGAAATCCTTTCCAGC
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