CX291368
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15 Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 2 Query: 74 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673 + + L +KL NG E + AA ++R + K++ + R A AG + LV +L SP+ E S+ ALLNL++ NE NK I AGAI +VE+LK + RE L+ +L G+ +G+ DA TA+ L + N S V V PL LLKD ++A A+L ILS+ Sbjct: 344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRN-VDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAG--GGMVDEALAILAILST 539
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14 Identity = 61/207 (29.47%), Postives = 105/207 (50.72%), Query Frame = 2 Query: 53 EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673 ++ N++K + L + L + LE + + + +R + +++ + R A AG + LV +L P+ E+++ LLNL++ +E NK I+ GAIP ++E+L+ N RE LV +L G+++G+ DA+TAL LS N +DA V PL+NLLKD K ++A ++L +L+S Sbjct: 372 DSQNEQKDE-VSLLVEALSSSQLEEQRRSVKQMRLLARENP-ENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSI-DEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKD--KNLGMIDEALSILLLLAS 573
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13 Identity = 58/197 (29.44%), Postives = 103/197 (52.28%), Query Frame = 2 Query: 83 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673 +++L ++L + L+T+ +A ++R ++ K ++ R +G + LV +L S + E+++ ALLNL++ N+ NK IA AGAI PL+ +L+ + +E LV +L +G+ +G+ DA TAL LS +EN + IV + AV LI+L+ + +KA A+L L++ Sbjct: 543 VKKLVEELKSSSLDTQRQATAELR-LLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA---AGMVDKAVAVLANLAT 734
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11 Identity = 59/198 (29.80%), Postives = 93/198 (46.97%), Query Frame = 2 Query: 83 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673 I L KL + +E + A +IR + K+S+ R A AG + LV +L S + + E+++ +LNL++ E NK I AGA+ +V +L+ + RE LV +L GSV+G+ DA TAL L + N V A V PL+ +L D + A++A +L +L+S Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRST-DNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIY-EHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSS-ERMADEALTILSVLAS 537
BLAST of CX291368 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11 Identity = 61/200 (30.50%), Postives = 94/200 (47.00%), Query Frame = 2 Query: 83 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL---LVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 673 +++L D L + L+T+ EA IR ++ ++S R A + LV +L S + ++ LLNL++ N+ NK IA +GAI PL+ +LK G L E LV +L SGS+ G+ DA TAL LS EN + +++A AV L+ L+ EKA +L L++ Sbjct: 423 VKKLIDDLKSSSLDTQREATARIR-ILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA---FGMVEKAVVVLANLAT 615 The following BLAST results are available for this feature:
BLAST of CX291368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291368 ID=CX291368; Name=CX291368; organism=Citrus clementina; type=EST; length=673bpback to top |