CX291369

Overview
NameCX291369
Unique NameCX291369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291369_ssr40 microsatellite CX291369_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH +LRKWL  NV+ EV ASTRII GGSVNGANCKEL  Q D  GFL GGASLK
Sbjct:  184 EVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH  LRKW  DNV+AEV+ASTRII GGSV+G+NCKEL  Q D  GFL GGASLK
Sbjct:  125 EVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLK 179          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH +LRKWL  NV+A+V A+TRII GGSVNG NCKEL  Q D  GFL GGASLK
Sbjct:  184 EVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH  LRKWL  NV+AEV  STRII GGSV GANCKELAA+ D  GFL GGASLK
Sbjct:  184 EVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH  LR WLK NV+ EV  STRII GGSV GA+CKELAAQ D  GFL GGASLK
Sbjct:  184 EVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH  LR WLK NV+ EV  STRII GGSV GA+CKELAAQ D  GFL GGASLK
Sbjct:  184 EVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH +LRKW+K+NV A+V  S RII GGSVNGAN KELA Q D  GFL GGASLK
Sbjct:  184 EVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 39/55 (70.91%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH KLR WLK NVN  V  STRII GGSV GA CKELA+Q D  GFL GGASLK
Sbjct:  184 EVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH  LR WLK N + EV  STRII GGSV  ANCKELAAQ D  GFL GGASLK
Sbjct:  184 EVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK 238          
BLAST of CX291369 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  240 KVHTKLRKWLKDNVNAEVTASTRIILGGSVNGANCKELAAQLDNGGFLGGGASLK 404
            +VH KLR WLK NV+  V  STRII GGSV GA CKELA+Q D  GFL GGASLK
Sbjct:  184 EVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK 238          
The following BLAST results are available for this feature:
BLAST of CX291369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TPIS_PETHY1.658e-1472.73Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_LACSA2.166e-1470.91Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ARATH3.694e-1469.09Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_ORYSJ8.230e-1472.73Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU8.230e-1470.91Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_SECCE1.404e-1370.91Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_COPJA1.404e-1369.09Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_MOUSE3.127e-1370.91Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_MAIZE5.335e-1369.09Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_MACMU6.967e-1369.09Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]

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Properties
Property NameValue
Genbank descriptionC03007B12SK OF2 Citrus clementina cDNA clone C03007B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291369 ID=CX291369; Name=CX291369; organism=Citrus clementina; type=EST; length=705bp
GAGGCACACTCAACCCGAGCCTAAATACTCATCGTCACTATCAATCAATC
AACCACTATGTACACTACCTAAACTCTAGACAGCGGACCGTTCCCCACCT
GTGTTCAAACTCCCAGCGTTCAAATCAACATTGAAGCCATTGTTTGAACT
GCGAACTAAATCCTAGAAACCAAGATTTGTCGCTACTGTATCTAGTCTCT
CGCTATTGAAGATTTTAGTCCTTTCAGCGAAGTATCTTCAAGGTCCATAC
TAAACTGAGGAAATGGCTTAAAGACAATGTCAATGCTGAAGTTACAGCAT
CAACTAGAATCATCTTGGGAGGTTCTGTAAATGGAGCAAATTGTAAAGAA
TTGGCAGCACAACTGGATAATGGTGGATTTTTGGGCGGTGGAGCTTCTCT
AAAGGTTTTGTGTTACCCCATCCTGGACAAATACCGGACATTTCTCATCC
CAGCAGAGTAGAAGACTGAGATAGATGAAGTTTCTTTGGAGTGGGCTGGC
CATTGTTCTGAAATCATTAGCGCAGCAAAAAAAAAAAAGAAATGAATTGA
AGCTGCTGGACTTGAGAGTTTGATTGGGTATTGTTGAAAATGGCAGTTCA
TGTACTGGAAGTTTACTGAAATTATGGGTTAAGTTCAGCACTACAGCCAC
TTGATGCCTTCTTAGCTTGTAAAACTGATACATTTGTTCTTAGTTGCTGG
ATTTT
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