CX291385

Overview
NameCX291385
Unique NameCX291385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291385 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15
Identity = 51/154 (33.12%), Postives = 86/154 (55.84%), Query Frame = 3 
Query:   42 EIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQL--AALDFIGCTAANAFAMT-DSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQT 494
            E R+ G CPLTPEE  L+L A+ F+  T +++A  +++GG + +    +L+P L   +N  S    E     S  L  +A+D++ C  ++ F  T D  S  ++ + G+R+YY  G   TIRP+++ LA IF+     +   FE+ VR+ + +T
Sbjct:  302 ERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYY--GFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKT 450
The following BLAST results are available for this feature:
BLAST of CX291385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH6.425e-1533.12DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC03007D04SK OF2 Citrus clementina cDNA clone C03007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291385 ID=CX291385; Name=CX291385; organism=Citrus clementina; type=EST; length=650bp
GAGGAAATTATTCAACTGGTTGCAGGTTACCTTCTCCTGCTGAGATCAGG
TCTGAGGGCCTCTGTCCATTGACACCTGAAGAAGCAGTGCTGATGCTTGC
TGCTCTTGGTTTCAATCGTAAGACACATGTATTTGTGGCGGGGGCACAGA
TATATGGAGGGACACGAAGATTGGGTGCTTTGAACAGCTTATATCCTTAT
CTAGTTACTAAAGAGAACTTGCTTTCAGCAACGGAACTCGAACCATTCAA
GAACTTTTCATCTCAGCTAGCAGCACTAGATTTTATTGGCTGCACTGCTG
CCAATGCATTTGCCATGACAGACTCGGGGAGTCAGTTGTCATCATTGGTA
TCTGGTTATCGAATATACTATGGTGGAGGAAAGATGCCAACAATACGGCC
AAATAAAAGACGACTTGCAGCGATCTTCGTGAAGAATTCTACTATAGAGT
GGAAAGTCTTTGAACAGCGAGTTCGGAAGGCAGTTCGACAAACTAAACAC
ATCCAGTCTAGGTCAAAAGGAAGAAGCGTTTACCGGTATCCAAGATGTAA
AGAGTGTATGTGTCCTACAGATTAATCGGCTTGCCTAAACGGGCATATTT
TTTGCCAATTCCAGCATGTATTTTTATTAAAAAAAAAAAAAAAAAAAAAA
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