CX291386

Overview
NameCX291386
Unique NameCX291386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14589 contig Ccv1_Contig14589:644..1346. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DIM_PEA (Cell elongation protein diminuto OS=Pisum sativum GN=DIM PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 6.223e-115
Identity = 190/223 (85.20%), Postives = 205/223 (91.93%), Query Frame = 3
Query:    3 DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLY 671
            DLFYAIPWSQGTLGLLV+AE+KLIPIKEYMKLTYKPVV NL++IAQAY+DSFAPRDGDQDN  KVPDFVE MIY+ T AV MTGRYASKEEAKKKGN IN+VGWW+K WFYQHA TALK+G F EYIPTREYYHRHTR LYWEGKLILPFGDQF FRFLFGW+MPPKVSLLKATQGEAIRNYYH+ HVIQDMLVPLYKVGDALEW   EME+YP+WLCPH+L+
Sbjct:  206 DLFYAIPWSQGTLGLLVAAEVKLIPIKEYMKLTYKPVVGNLKDIAQAYSDSFAPRDGDQDNDEKVPDFVETMIYSPTRAVCMTGRYASKEEAKKKGNKINNVGWWYKTWFYQHAETALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFSFRFLFGWLMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVPLYKVGDALEWSDREMEIYPIWLCPHKLF 428          
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DIM_ARATH (Cell elongation protein DIMINUTO OS=Arabidopsis thaliana GN=DIM PE=1 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 1.485e-108
Identity = 177/223 (79.37%), Postives = 198/223 (88.79%), Query Frame = 3
Query:    3 DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLY 671
            DL+YAIPWSQGTLGLLV+AEI+LI +KEYM+LTY PV  +L+ +AQ Y DSFAP+DGD+   +K+PDFVEGM+Y  TE V M G YASKEEAKKKGN IN+VGWWFKPWFYQHA TALK+G+F EYIPTREYYHRHTR LYWEGKLILPFGDQFWFR+L GW+MPPKVSLLKATQGEAIRNYYH  HVIQDMLVPLYKVGDALEW H EMEVYP+WLCPH+L+
Sbjct:  207 DLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRLTYIPVKGDLQALAQGYIDSFAPKDGDK---SKIPDFVEGMVYNPTEGVMMVGTYASKEEAKKKGNKINNVGWWFKPWFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEVYPIWLCPHKLF 426          
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DHC24_MACFA (24-dehydrocholesterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 112/225 (49.78%), Postives = 148/225 (65.78%), Query Frame = 3
Query:    3 DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRG-EFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLYS 674
            DLFYA+PWS GTLG LV+AEI++IP K+Y+KL ++PV        +A    F      Q+N      FVEG++Y+  EAV MTG    + E  K    +NS+G ++KPWF++H    LK   E  EYIP R YYHRHTRS++WE + I+PFG+   FR+LFGWM+PPK+SLLK TQGE +R  Y Q+HV+QDMLVP+  +  AL     ++ VYP+WLCP  L S
Sbjct:  209 DLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKLRFEPVQG-----LEAICAKFTHESQRQENH-----FVEGLLYSLDEAVIMTGVMTDEVEPSK----LNSIGNYYKPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPS 419          
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DHC24_HUMAN (24-dehydrocholesterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 112/225 (49.78%), Postives = 148/225 (65.78%), Query Frame = 3
Query:    3 DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRG-EFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLYS 674
            DLFYA+PWS GTLG LV+AEI++IP K+Y+KL ++PV        +A    F      Q+N      FVEG++Y+  EAV MTG    + E  K    +NS+G ++KPWF++H    LK   E  EYIP R YYHRHTRS++WE + I+PFG+   FR+LFGWM+PPK+SLLK TQGE +R  Y Q+HV+QDMLVP+  +  AL     ++ VYP+WLCP  L S
Sbjct:  209 DLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKLRFEPVRG-----LEAICAKFTHESQRQENH-----FVEGLLYSLDEAVIMTGVMTDEAEPSK----LNSIGNYYKPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPS 419          
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DHC24_MOUSE (24-dehydrocholesterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.010e-56
Identity = 111/225 (49.33%), Postives = 149/225 (66.22%), Query Frame = 3
Query:    3 DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRG-EFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLYS 674
            DLFYA+PWS GTLG LV+AEI++IP K+Y+KL ++PV   L  I + +          +++Q     FVEG++Y+  EAV MTG      E  K    +NS+G ++KPWF++H    LK   E  EYIP R YYHRHTRS++WE + I+PFG+   FR+LFGWM+PPK+SLLK TQGE +R  Y Q+HV+QDMLVP+  +  AL     ++ VYP+WLCP  L S
Sbjct:  209 DLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKLRFEPV-RGLEAICEKFT---------RESQRLENHFVEGLLYSLDEAVIMTGVMTDDVEPSK----LNSIGSYYKPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCMSQALHTFQNDIHVYPIWLCPFILPS 419          
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DHC24_RAT (24-dehydrocholesterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.319e-56
Identity = 111/225 (49.33%), Postives = 148/225 (65.78%), Query Frame = 3
Query:    3 DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRG-EFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLYS 674
            DLFYA+PWS GTLG LV+AEI++IP K+Y+KL ++PV   L  I + +           ++Q     FVEG++Y+  EAV MTG      E  K    +NS+G ++KPWF++H    LK   E  EYIP R YYHRHTRS++WE + I+PFG+   FR+LFGWM+PPK+SLLK TQGE +R  Y Q+HV+QDMLVP+  +  AL     ++ VYP+WLCP  L S
Sbjct:  209 DLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKLRFEPV-RGLEAICEKFT---------HESQRLENHFVEGLLYSLDEAVIMTGVMTDDVEPSK----LNSIGSYYKPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLSQALHTFQNDIHVYPIWLCPFILPS 419          
BLAST of CX291386 vs. ExPASy Swiss-Prot
Match: DIML_CAEEL (Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.361e-52
Identity = 97/224 (43.30%), Postives = 143/224 (63.84%), Query Frame = 3
Query:    6 LFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVVSNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATAL-KRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHLEMEVYPLWLCPHRLYS 674
            LF+AIPWSQGT+  LV+A IK+IP K+Y+KLTYK     L E+ +   +       D D  ++  DFVE +++   +   M G ++   +   +  V+N +G W+K WFY H    + K+ E  EYIP R+YYHRH++S++WE + I+PFG+   FR+L  WM PPK++ LKAT    +R  Y ++HV+QDMLVPL K+ + ++  H E+E+YP+WLCP  L S
Sbjct:  215 LFFAIPWSQGTICFLVAATIKIIPCKKYVKLTYKKT-ETLSEMCEQLTE-------DSDRNSENVDFVEALMFNKEKGCIMLGEFSDGPDTHDE--VVNPIGRWYKKWFYTHVEDLINKKHESIEYIPLRDYYHRHSKSIFWELRDIVPFGNNVLFRYLMAWMCPPKIAFLKATTPNVLRKLYDRSHVLQDMLVPLDKLEECIDLFHKEVEIYPMWLCPFYLKS 428          
The following BLAST results are available for this feature:
BLAST of CX291386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DIM_PEA6.223e-11585.20Cell elongation protein diminuto OS=Pisum sativum ... [more]
DIM_ARATH1.485e-10879.37Cell elongation protein DIMINUTO OS=Arabidopsis th... [more]
DHC24_MACFA7.731e-5749.7824-dehydrocholesterol reductase OS=Macaca fascicul... [more]
DHC24_HUMAN7.731e-5749.7824-dehydrocholesterol reductase OS=Homo sapiens GN... [more]
DHC24_MOUSE1.010e-5649.3324-dehydrocholesterol reductase OS=Mus musculus GN... [more]
DHC24_RAT1.319e-5649.3324-dehydrocholesterol reductase OS=Rattus norvegic... [more]
DIML_CAEEL3.361e-5243.30Diminuto-like protein OS=Caenorhabditis elegans GN... [more]
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Properties
Property NameValue
Genbank descriptionC03007D05SK OF2 Citrus clementina cDNA clone C03007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291386 ID=CX291386; Name=CX291386; organism=Citrus clementina; type=EST; length=698bp
AAGATCTTTTCTATGCAATTCCCTGGTCTCAGGGGACACTAGGGCTTCTT
GTCTCGGCTGAGATCAAGCTTATACCCATTAAGGAATACATGAAGCTGAC
TTACAAACCTGTAGTGAGTAATCTAAGAGAGATTGCACAGGCCTATGCAG
ACTCTTTTGCTCCAAGAGATGGGGATCAGGACAATCAAGCTAAGGTTCCA
GACTTCGTAGAAGGCATGATTTACACTTCAACAGAAGCTGTATTTATGAC
AGGGAGATATGCCTCAAAAGAAGAGGCCAAGAAAAAGGGAAATGTAATTA
ACAGCGTCGGTTGGTGGTTTAAACCATGGTTCTATCAGCATGCAGCCACA
GCTCTTAAGAGAGGGGAGTTCACAGAGTACATACCCACAAGAGAGTATTA
CCACAGGCACACAAGGTCTTTGTACTGGGAGGGAAAACTCATCCTACCAT
TTGGAGATCAATTTTGGTTCAGGTTTCTCTTCGGCTGGATGATGCCACCC
AAGGTTTCTTTGCTTAAGGCTACTCAAGGTGAAGCCATCAGAAACTACTA
CCATCAGAATCATGTCATCCAGGACATGCTTGTTCCTCTCTACAAGGTTG
GAGATGCCCTGGAGTGGCAACACCTTGAGATGGAGGTATACCCACTTTGG
CTCTGTCCACATCGGCTGTACAGCTTCCATACAAACTATGGTGTATCC
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