CX291395

Overview
NameCX291395
Unique NameCX291395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.042e-48
Identity = 104/173 (60.12%), Postives = 133/173 (76.88%), Query Frame = -2
Query:  195 QKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 707
            +KH L VST+QM +LMLFN+ D+ +++EI+Q T+IP  EL R LQSLAC K  + VL KEP SK+I     F  ND+FTSK  +VKI TV A Q ES+PE +ETRQ+V++DRK +IEAAIVRIMK+R+ + HN +V EVT+QL++RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  588 RKHILQVSTFQMTILMLFNNRDKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48
Identity = 103/173 (59.54%), Postives = 133/173 (76.88%), Query Frame = -2
Query:  195 QKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 707
            +KH L VST+QM +LMLFN+ ++ +++EI+Q T+IP  EL R LQSLAC K  + VL KEP SK+I     F  ND+FTSK  +VKI TV A Q ES+PE +ETRQ+V++DRK +IEAAIVRIMK+R+ + HN +V EVT+QL++RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  588 RKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48
Identity = 103/173 (59.54%), Postives = 133/173 (76.88%), Query Frame = -2
Query:  195 QKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 707
            +KH L VST+QM +LMLFN+ ++ +++EI+Q T+IP  EL R LQSLAC K  + VL KEP SK+I     F  ND+FTSK  +VKI TV A Q ES+PE +ETRQ+V++DRK +IEAAIVRIMK+R+ + HN +V EVT+QL++RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  588 RKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48
Identity = 103/173 (59.54%), Postives = 133/173 (76.88%), Query Frame = -2
Query:  195 QKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 707
            +KH L VST+QM +LMLFN+ ++ +++EI+Q T+IP  EL R LQSLAC K  + VL KEP SK+I     F  ND+FTSK  +VKI TV A Q ES+PE +ETRQ+V++DRK +IEAAIVRIMK+R+ + HN +V EVT+QL++RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  588 RKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48
Identity = 103/173 (59.54%), Postives = 133/173 (76.88%), Query Frame = -2
Query:  195 QKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 707
            +KH L VST+QM +LMLFN+ ++ +++EI+Q T+IP  EL R LQSLAC K  + VL KEP SK+I     F  ND+FTSK  +VKI TV A Q ES+PE +ETRQ+V++DRK +IEAAIVRIMK+R+ + HN +V EVT+QL++RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  588 RKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.116e-42
Identity = 100/204 (49.02%), Postives = 128/204 (62.75%), Query Frame = -2
Query:  195 QKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPM---------------------------------SKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 707
            + HEL VS+YQM +L+LFN   +L++KEI   T IP  +LKR L +L   K K + R+ P                                  SK I E D F FN KF SK  +VK+  VV Q+E+  E +ETR +V+EDRK QIEA+IVRIMKAR+ L+H+N+V+EV KQLQSRF+PNPV++KKRIESLIERE+LER K D
Sbjct:  559 KSHELQVSSYQMVILLLFNDQSKLTFKEIADQTGIPTIDLKRNLLALTNPKNKILDRELPSTTSSTTTTTTTATSSSTSTSPSSSSSSISTPTPSKSIDESDVFAFNTKFKSKLFRVKVMAVV-QKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQD 761          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = -2
Query:  195 LNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKGKH--VLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 695
            L V+T+QM +L+ FN  +R+S +++    +IP  ELKR LQSLA  K     ++RK      I   D F  ND F SK  +VK+  V  + ESEPE +ETRQ+VE+DRK ++EAAIVRIMKAR+ L+HNN+V EVT+QL+ RF+P+P++IK+RIE+LIERE+L RD+ D
Sbjct:  601 LQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHD 769          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 79/173 (45.66%), Postives = 117/173 (67.63%), Query Frame = -2
Query:  207 KGQKHELNVSTYQMCVLMLFNSVDR---LSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQR-ESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLER 713
            K +K++LNVST    +L+LF  +     L ++EI + T I   +LKR LQSLAC K K +L K+P  +++   D F+FN+ F S   ++KI TV   R E + E + T ++V+E RK Q +A IVR+MK R+V +HN ++ EVT+QL  RF P+P++IK+RIE+LIERE+L+R
Sbjct:  602 KDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIEVGDLKRNLQSLACAKYK-ILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQR 773          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.253e-34
Identity = 84/171 (49.12%), Postives = 111/171 (64.91%), Query Frame = -2
Query:  201 KGQKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDK 713
            K  K EL VS +Q  VL++FN  +  S +EI+QAT I   EL+R LQSLAC K + VL K P  KDI + D F  ND F  K  ++KI  +   +E+  E   T +RV +DR+ QI+AAIVRIMK R+ L HN +V+EV  QL  +F   P  +KKRIESLI+R+++ERDK
Sbjct:  719 KEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKAR-VLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQI-QMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKPADLKKRIESLIDRDYMERDK 885          
BLAST of CX291395 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.367e-32
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = -2
Query:  201 KGQKHELNVSTYQMCVLMLFNSVDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDK 713
            K  K E  VS +Q  VL++FN  D  S++EI+ AT I   EL+R LQSLAC K + VL K P  K++ + D F FN +F  K  ++KI   +  +E+  E   T +RV +DR+ QI+AAIVRIMK R+ L HN +V+E+  QL  +F   P  +KKRIESLI+R+++ERDK
Sbjct:  583 KEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDK 749          
The following BLAST results are available for this feature:
BLAST of CX291395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL3A_XENLA1.042e-4860.12Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_XENTR3.031e-4859.54Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_MOUSE3.031e-4859.54Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN3.031e-4859.54Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL3B_XENLA3.031e-4859.54Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_DICDI1.116e-4249.02Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_CAEEL1.781e-4052.07Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL3_SCHPO4.540e-3645.66Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4B_HUMAN3.253e-3449.12Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_HUMAN1.367e-3246.78Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC03007E02SK OF2 Citrus clementina cDNA clone C03007E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291395 ID=CX291395; Name=CX291395; organism=Citrus clementina; type=EST; length=714bp
TAGTCTCAGTTTTTTTTTTTTTTTTTTGAAACACAACAAATATGAAGTAA
AATTGACCTGAACCTGTAGGTAATCTGAGAACAGTATTCCATCTTACAAA
TGGAGGATAGAATTCCAAAACCCCGTTAAAAAGTCCTGAAAGTGACACAA
CTAAAATTTTTTTTCTTTCAAGCAAGGTATCGGTACAATTTCCTGTCCAC
TTTGTCCCTCTCTAGAAACTCCCTTTCGATTAGGGACTCTATTCTTTTTT
TAATTACAACTGGATTCGGCAGAAACCGAGATTGCAGCTGCTTTGTGACT
TCAGTAACAATGTTATTGTGATCCAGCACCCGTCTTGCCTTCATGATCCT
TACAATCGCTGCCTCTATCTGGGGTTTCCTGTCTTCCTCCACTCTTTGTC
TGGTTTCCTGATTTTCCGGTTCAGACTCTCTTTGTGCAACCACTGTACCT
ATCTTAACCTTAACGAACTTGCTTGTGAACTTGTCGTTGAAGAAGAAGGC
ATCATCTTCAGCTATGTCTTTGCTCATGGGTTCCTTCCTAAGAACATGCT
TACCCTTGACACAGGCCAGCGACTGCAGGCACCTCTTCAATTCTGGGGCA
GGTATTTCTGTGGCCTGCTCAATTTCTTTGTAACTCAACCGATCAACGCT
ATTGAATAGCATCAGTACACACATCTGGTAAGTTGAAACATTCAGCTCAT
GTTTCTGGCCTTTT
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