CX291399

Overview
NameCX291399
Unique NameCX291399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14196 contig Ccv1_Contig14196:1359..1990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.516e-47
Identity = 91/103 (88.35%), Postives = 100/103 (97.09%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            KLAYRVS+ADVTRARNQLKSSLLLH+DGTSP+AEDIGRQLLTYGRRIP AELFARID+VDASTVKRVAN++IYD+DIAI+A+GPIQ LPDYN FRRRTYWNRY
Sbjct:  429 KLAYRVSDADVTRARNQLKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAISAIGPIQDLPDYNKFRRRTYWNRY 531          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 307
            +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA TV+RV  ++I+D+  AIAA+GPI+ LPD+N       W R
Sbjct:  387 RLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAIAALGPIERLPDFNQICSNMRWIR 488          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 307
            +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IY+R  AIAA+GPI+ LPD+   R    W R
Sbjct:  387 RLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.878e-24
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDAS V+ + +++IYD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  378 RLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.452e-24
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 307
            +L   VSE++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA  V+ V  ++IY +  AIAA+GPI+ LPD+N       W R
Sbjct:  387 RLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSPAIAALGPIERLPDFNQICSNMRWTR 488          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.183e-24
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            +LA   SE +V  A+ QLK+SLLL +DGT+PVAE+IGRQ+L YGRR+   E+   +D+V    VKRVAN FIYDRD+AI A+GP++ LPDYN  R      RY
Sbjct:  363 RLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANEFIYDRDLAIVAVGPVECLPDYNRIRSAMNLLRY 465          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.318e-24
Identity = 51/103 (49.51%), Postives = 73/103 (70.87%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI+ VDA  V+ V +++ YD+  A+A  GPI+ L DYN  R   +W R+
Sbjct:  378 RLCTSATESEVTRGKNILRNALISHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIEEVDAQMVREVCSKYFYDQCPAVAGYGPIEQLSDYNRIRSGMFWLRF 480          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.318e-24
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 307
            +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IY+R  AIAA+GPI+ LPD+        W R
Sbjct:  387 RLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIEQLPDFKQICSNMCWLR 488          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.217e-23
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  ++ + +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  378 RLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.217e-23
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  378 RLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480          
The following BLAST results are available for this feature:
BLAST of CX291399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MPPB_ARATH3.516e-4788.35Probable mitochondrial-processing peptidase subuni... [more]
MPPB_MOUSE4.941e-2552.94Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.438e-2451.96Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_HUMAN1.878e-2450.49Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_RAT2.452e-2451.96Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM4.183e-2455.34Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_RAT9.318e-2449.51Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_PONAB9.318e-2450.98Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE1.217e-2348.54Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN1.217e-2349.51Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03007E06SK OF2 Citrus clementina cDNA clone C03007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291399 ID=CX291399; Name=CX291399; organism=Citrus clementina; type=EST; length=632bp
CAAGTTAGCTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCGTAATC
AGTTGAAATCATCCCTGTTGCTTCACATTGATGGAACAAGCCCTGTAGCT
GAAGATATTGGACGCCAGCTGCTTACATATGGTCGAAGAATCCCATTTGC
TGAATTGTTTGCTAGGATAGACTCCGTAGATGCAAGCACTGTCAAGCGCG
TTGCAAACAGATTTATTTACGACAGGGATATCGCAATTGCTGCAATGGGT
CCAATTCAAGGTTTACCCGACTACAACTGGTTCAGACGCAGAACCTACTG
GAATAGATACTAAGTTATCTCATGGTTGTTCATTACTGCATCCCCGCCTT
CCTGGGCGGAGATTTCAAACAATTTTTGGGTTGCAATTTACACAATCAAT
GCCCTTGGGAGAGGCTTCAGGGCTATGGTATTTTATTGAATTCTTTTCTA
GCTCTTGCTTCTGTAACTTCATAATTTGTTCAGGAAATAAGTAAGCTGTC
TTCACTCTTCAGTGATTTGGCCCTCGGATTTTCATTGCTTTGAGCTTAAC
AGCTCAAGTGACAGCTTTGAATGATGATAAATTTTCAGCTGCATCACATC
ATATTGCCTTTGGTTTTCAAGGGGCATTATGT
back to top