CX291400

Overview
NameCX291400
Unique NameCX291400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig360 contig Ccv1_Contig360:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291400 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 51/133 (38.35%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   28 NMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFN------DGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFINVTVSLTKIG 408
            ++  EG+IEEE ++ FN P Y  SP E+K  + KEGSF+ID LE+S V+W   + G   +++ D           G  VA  +RAV EP+L   FG+ ++DELF+RY ++V + +     ++  V VSL ++G
Sbjct:  263 SLAKEGIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDW---EGGSISDDSYDIVRFKPEALASGRRVAKTIRAVVEPMLEPTFGQKVMDELFERYAKLVGEYVYVSSPRYTIVIVSLLRMG 392          
BLAST of CX291400 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   28 NMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAF-------NDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFINVTVSLTKIG 408
            +M  EG+IEEEK++ FN P Y  S  E+K  + KEGSF+ID LE+S ++W   + G    E+ D            G  V+N +RAV EP+L   FGE+++DELF+RY +IV +       ++  V +SL + G
Sbjct:  259 SMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDW---EGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDELFERYAKIVGEYFYVSSPRYAIVILSLVRAG 389          
BLAST of CX291400 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 46/128 (35.94%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   28 NMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNA---YQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFINVTVSLTK 402
            +MV+EGL++ + +  FNIP Y+P   E+++ ++ EGSFT+D LEV  V W+A     +  + + ++      G  VA+C+RA+ EP+L S FG +I+D LF +Y + + + +S E + + ++ VSL++
Sbjct:  236 DMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVEHLSVENSSYFSIVVSLSR 363          
The following BLAST results are available for this feature:
BLAST of CX291400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JMT_BRARP5.982e-2038.35Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
JMT_ARATH5.982e-2039.55Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
BAMT_ANTMA2.969e-1935.94Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
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Properties
Property NameValue
Genbank descriptionC03007E07SK OF2 Citrus clementina cDNA clone C03007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291400 ID=CX291400; Name=CX291400; organism=Citrus clementina; type=EST; length=710bp
GAGGGAGCTCTTGGCCACGGCTCTCACAATATGGTCTCCGAGGGACTCAT
AGAAGAAGAGAAAGTGAATTGTTTCAACATTCCGCAGTATACACCATCAC
CAGCTGAAATAAAATCGGAGGTTATAAAGGAAGGATCCTTCACCATTGAT
CACCTTGAGGTTTCTGAAGTTAACTGGAACGCTTATCAGAATGGTTTTAA
GTTTAACGAGGCCGTTGATGCATTTAATGATGGAGGATACAACGTTGCGA
ATTGCATGAGAGCTGTGGCCGAGCCCTTGCTTGTTAGTCAGTTTGGTGAA
TCAATCATTGATGAGCTGTTTAAAAGGTACAGGGAAATTGTTGCCGATCG
CATGTCTAAGGAAAAGACTAAGTTTATCAACGTGACAGTTTCCTTGACGA
AAATTGGATGATCACTAAGATAAGACAATTATTAAGAAATAAAACTTGAG
AGGCATGTTAGCCTTTCCAATAATTTATCCCAAGAAGATGCGTCCTCATT
GATGTGCTTCAATATTGTGGATGGGAAAATGGGGTATTAAAAAATGTTCA
ACATCACCGTCCACTTAATAAATGTTACATCACTCATTTGAGGTGCACAT
TTCAGGATAATATTTAGAATGTTTAATTATCATAGTTAATTCTATCACTC
GTTGGTTTGAATATGTCAGTAAATTTTGGTATCACAAGTGTCGGCATTAT
ACTGTATCTC
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