CX291405

Overview
NameCX291405
Unique NameCX291405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291405 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  336 AQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMR 620
            AQ + +L+R    +P+ IDF+A WCGPC ++A  ++ LA E++   ++VKV+ D + + A   QV+G+P L        K   RT G IP Q MR
Sbjct:    2 AQTLDDLIRTSE-LPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLK--WRTAGAIPYQQMR 93          
BLAST of CX291405 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  348 QELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAI 584
            QE++    N+P+++DF+A WCGPC +++  ++ +A EYESS  +VK++TDD    A +  +R +PTL         D +
Sbjct:   13 QEVINN--NLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTV 89          
BLAST of CX291405 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  309 EDYLVKKKTAQEIQEL-VRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPD 566
            ED++VK    +  +E   RG+R  P IIDFYA WCGPC +++   E L+ +YE+S    KVDTD E + +  + V+ LPT+ FI  D
Sbjct:    8 EDFVVKVFDYKNDKEWSFRGDR--PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVD 92          
BLAST of CX291405 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  348 QELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAI 584
            QE++  +  +P+++DF+A WCGPC +++  ++ +A EYESS  +VK++TDD    A +  +R +PTL         D +
Sbjct:   13 QEVINND--LPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTV 89          
BLAST of CX291405 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 3
Query:  378 PIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 632
            P+++DF+A WCGPC ++A  ++ LA EY     I KV+TDD  ++A  + ++G+PTL        ++  R  G  P  M R+I D
Sbjct:   22 PVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFK--DGREVGRLVGARPEAMYREIFD 104          
BLAST of CX291405 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  366 ERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 632
            E  VP+++DF+A WCGPC L+A  I+ LA EY     + K++TD+    A    +R +PT+ F      K++I   G +P   + D I+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESI--IGAVPKSTLTDSIE 176          
The following BLAST results are available for this feature:
BLAST of CX291405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
THIO1_CHLTE4.143e-1238.95Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_PORYE1.205e-1136.71Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_BORBU1.205e-1143.68Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO_PORPU2.056e-1135.44Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_CHLAA2.056e-1137.65Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
TRXM_SPIOL5.982e-1135.96Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
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Properties
Property NameValue
Genbank descriptionC03007E12SK OF2 Citrus clementina cDNA clone C03007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291405 ID=CX291405; Name=CX291405; organism=Citrus clementina; type=EST; length=676bp
AACTGACCTCAATTTTTATCTCCAACAACGCAGTTACAAATTGCTATCAA
CTAAACCCTGCTAAAACCTCATATCAAAATCTCTCTCTGCTGAATATGGC
TCTGCTGCAATTCAATTCCTTCTCCTCCTTTTCCGTACTATCTACTTCAC
AACAACAGGCTTATCTTTCACCATCTTCCATAAAAACCCATCAACAAAAC
AATTCTCTCTTCTCTTTCTCCGCAACAAATACCAAAGACGGATTGTTTTC
CCTCTCAACACACCCAAGAAAGTTTCTTTGTAAACCTCCTCAAGGCAAGT
ATGTCAGAGAAGACTATCTCGTGAAGAAGAAGACAGCTCAAGAAATCCAG
GAGCTGGTAAGAGGAGAGAGAAATGTACCCATTATTATTGATTTTTATGC
AACCTGGTGTGGCCCCTGTATTTTAATGGCCCAAGAGATTGAATTGCTAG
CTGTGGAGTATGAGAGCAGTGCAATGATTGTGAAGGTTGATACAGATGAC
GAGTATGAATTTGCACGTGACATGCAGGTTCGAGGGCTTCCTACGCTATT
TTTTATCAGTCCAGACCCAAACAAAGATGCAATCCGGACAGAGGGACTTA
TCCCGATACAGATGATGAGAGACATCATTGATAATGAGATGTGAAGGCTA
TGCAGGAAGAATTTTCTCTTTGGTTA
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