CX291406

Overview
NameCX291406
Unique NameCX291406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291406 vs. ExPASy Swiss-Prot
Match: FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana GN=At2g27310 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 53/178 (29.78%), Postives = 97/178 (54.49%), Query Frame = 2 
Query:   65 DGKLW-KELRDGLRLSWIVVNKKMKQAANLASWSPLGGQRHWPTDKDFVIRFGSVLPAKDILPCQVVECILSMKFRVVHTEEEGVQTTLKLTELSMQLEDMEGAHVNGRNSLLILKEALSCHRSKNYSE---VLESCHLYSKVQSELKEEKMRSESRLDRLCILSGIAAFITFCYCIL 586
            D + W K++ + ++L+WI+++   K+AAN++S   +  +R+W T  D  IRF +V+ A+      VV C  +  ++ V   +E V   + + ++ +Q+ED+EG  + GR+SL+IL+  L   RS    E     E    Y +++ + +E K R E   D +C++ G + F+     IL
Sbjct:  162 DYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTG-DLEIRFSTVVTAEAAEVAAVVSCGSAEAWKEV---DEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQGLLDGKRSCKDDEERRAKERYEEYVRMKIQWRENKERREKAQDTICMIFGFSMFVLLWSFIL 335
The following BLAST results are available for this feature:
BLAST of CX291406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB119_ARATH9.802e-1529.78F-box protein At2g27310 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC03007F01SK OF2 Citrus clementina cDNA clone C03007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291406 ID=CX291406; Name=CX291406; organism=Citrus clementina; type=EST; length=708bp
GTGAAGTACCCTTTCGGTTTCTGATGGTCTTCCTCCAATTTTCTCCATGG
AAAAAGAGAGAAAAGATGGAAAGCTGTGGAAAGAGCTTCGTGATGGACTA
CGGCTCAGTTGGATTGTTGTAAACAAAAAGATGAAGCAAGCTGCTAATCT
AGCTAGCTGGAGCCCTCTTGGGGGCCAACGACATTGGCCAACAGACAAGG
ATTTTGTGATACGCTTTGGATCTGTTCTTCCTGCCAAAGATATTCTTCCA
TGTCAAGTGGTAGAATGCATACTAAGTATGAAGTTCAGAGTTGTTCATAC
TGAGGAGGAGGGTGTACAGACAACTCTCAAGTTGACTGAGCTGAGCATGC
AGTTGGAAGACATGGAAGGTGCTCATGTTAATGGAAGAAACAGTTTGCTC
ATTCTCAAGGAGGCCTTGAGCTGCCATCGGAGCAAAAACTATAGTGAAGT
TCTTGAGTCATGTCATTTATACTCAAAAGTTCAAAGCGAGTTAAAAGAGG
AGAAGATGAGAAGTGAAAGCAGGTTAGACAGACTTTGTATCTTAAGTGGC
ATTGCAGCCTTCATTACTTTCTGTTACTGCATTTTGTAGATTAATTTGCC
TTTTCTGATCTTAACATAGCTGAAAATGCTTTAGCAGACACTGAGCCTTT
GTACTCTTTTAGATGTAAAGTTCAATTTTGCCTTAATTAATAAAGATATT
GGTCTCTG
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