CX291440

Overview
NameCX291440
Unique NameCX291440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6690 contig Ccv1_Contig6690:17..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291440 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:  112 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 543
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CX291440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.451e-1639.73Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03007H11SK OF2 Citrus clementina cDNA clone C03007H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291440 ID=CX291440; Name=CX291440; organism=Citrus clementina; type=EST; length=734bp
AGGGTTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCCTAGGGTCAGGTTTC
TTTCCTTTGTCTCTAGACTCCAAAACTCTCTCGCTCAATGGCTGATGTCC
AGGAGGTTCAGAATGGAGCTGCGCCGGAGAAGGCTCCTGCTACCGTGGCC
AGCTTCACGGGGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTAC
TGACGCTGTTCAGTTCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGCC
GTAGCGTGGAAACCAAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCC
TGCGCTCAACTCGAGATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTC
CGGTGACTCTGCTGCTGCACAGACCGTGGGGACCGGATGCGTGCTTTGCT
TGGAGACCGAGGACGTGGAGGCTGCCGTCGCCAAGGCTGTGAGTGCTGGA
GCTGTTGCTGAGGGTGAGCTCGCTGAAGGCAACGGCGCGTGTTGTGGAGA
GCGCGTGGGAAAGGTCAAAGATCCTTATGGCTTCACTTGGCTCATTTGCT
CCCCGGTCAAGAAGTGCGCTGGCGTGGAAGCTTAAGAGCCGCCTGATCTG
ATCTTTAGATATTGATCTACTATCACATAACTCTCTTTTGTCGTTCGTCT
TTACTGCTGTGGGTTTATAGCTCTAGGCTCTTTTAGTATTTCGGATATCT
TGATGATATTGCTGAAACGTGATCGTGATGATGG
back to top