CX291459

Overview
NameCX291459
Unique NameCX291459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14191 contig Ccv1_Contig14191:31..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_HUMAN (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  297 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL-YC 671
            + VFVTVGTT FD L+  V   +  Q++   GY  L++Q+GRGT VP     E     +D + +  S+ + ++ A LVISHAG+GS  ETL  GKPL+VV+NE LM+NHQ ELA++L    HL YC
Sbjct:    2 KCVFVTVGTTSFDDLIACVSAPDSLQKIESLGYNRLILQIGRGTVVPEPFSTES--FTLDVYRYKDSLKEDIQKADLVISHAGAGSCLETLEKGKPLVVVINEKLMNNHQLELAKQLHKEGHLFYC 125          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_MOUSE (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 3
Query:  306 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL-YC 671
            FVTVGTT FD LV  V   +  Q L   GY HL++Q+GRGT VP     E     +D + +  S+ + L+ A LVISHAG+GS  E+L  GKPL+VVVNE LM+NHQ ELA++L    HL YC
Sbjct:    5 FVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGTVVPKPFRTES--FTLDVYRYKDSLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYC 125          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_RAT (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 3
Query:  306 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL-YC 671
            FVTVGTT FD LV  V   +  Q L   GY HL++Q+GRGT VP     E     +D + +  S+ + L+ A LVISHAG+GS  E+L  GKPL+VVVNE LM+NHQ ELA++L    HL YC
Sbjct:    5 FVTVGTTSFDDLVARVVANDTVQILKSLGYNHLVLQIGRGTVVPEPFSTEP--FTLDVYRYKESLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYC 125          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_SCHPO (UDP-N-acetylglucosamine transferase subunit alg13 OS=Schizosaccharomyces pombe GN=alg13 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.746e-20
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 3
Query:  306 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG--TYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL 665
            FVTVG+T FD L++AV   E +  L + G   L++Q G+G   +   KS+    ++  DY   +  I  ++  AS+VISHAG+GSI +TLR GK L+VV NE LMDNHQ ELA +LA+  +L
Sbjct:    4 FVTVGSTQFDDLIRAVLKPEFQHCLVKHGINQLIVQYGKGKQAFGDPKSVAGLTILGFDY---APEIESYIHDASIVISHAGAGSILQTLRSGKRLLVVPNESLMDNHQVELATKLASMNYL 122          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_YARLI (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Yarrowia lipolytica GN=ALG13 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 49/122 (40.16%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  300 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL 665
            ++  T GT  F+AL++ V + E    L++ G++ + +Q GRG         ++G+M++  F ++  +A  +  A LVISHAG+GS+ + LR GK  +VVVN  LMDNHQ E+AEEL  ++HL
Sbjct:   30 VLVTTGGTVPFEALIELVLSHESITTLSQLGFSKMRVQYGRGNRHIFTKHHKEGVMSITGFEYTDDLAGEMSRAHLVISHAGTGSVLDALRIGKHPVVVVNSKLMDNHQIEIAEELFRKRHL 151          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_ASPFU (UDP-N-acetylglucosamine transferase subunit alg13 OS=Aspergillus fumigatus GN=alg13 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  297 RIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-------------PTKSLGEDGLMAVDY-----FTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAH 677
            ++ FVTVG T  F+ LV+A         L   GY+HLL+Q G+   +             P + +   G    ++     F  + +     RS  LVISHAGSG+I E LR G PLIVV N  L DNHQ ELA +L  + ++  +H
Sbjct:    5 KVCFVTVGATASFEELVRAALDPSFVTALEENGYSHLLVQYGKNAVIYENFLKQYPPERRPWRRINISGFSFHEHGLGGDFALAQADISKGRSGGLVISHAGSGTILEVLRMGIPLIVVPNPSLQDNHQEELARQLQKQGYVVASH 150          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_YEAST (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Saccharomyces cerevisiae GN=ALG13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 55/159 (34.59%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  294 KRIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRG------------------TYVPTKSLG----------EDGLMAVDYFTFSSSIADHLRSAS-LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHP 680
            ++ +FVT G T  F  LV  V + E  QEL + G+  L+IQ GR                     +P    G           +G + V  F FS+ +   +R  S LVISHAG+GSI ++LR  KPLIV VN+ LMDNHQ ++A++     +++   P
Sbjct:    6 EKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAP 164          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_KLULA (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Kluyveromyces lactis GN=ALG13 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 56/158 (35.44%), Postives = 76/158 (48.10%), Query Frame = 3
Query:  291 LKRIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRG--------------TYVPTKSLGEDGLMAVDY-------------FTFSSSIADHL-RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAH 677
            +   V VT G T  F  LV+ V    V ++L   GY  ++IQ GRG               +   KS G   L  ++              F FS  I   +  +  LVISHAG+GSI ++LR GK LIVVVN+ LMDNHQ  +A++   +K L+  H
Sbjct:    1 MNNTVLVTCGATVSFPRLVETVLDRSVTEKLKVLGYGRIVIQYGRGFSDTFLQLVEKHLGLFTEKKSCGIKVLDKIENLKVISVDGIEICGFEFSHDIEKLIANNIDLVISHAGTGSILDSLRVGKKLIVVVNDTLMDNHQQLIADKFEQQKLLWSVH 158          
BLAST of CX291459 vs. ExPASy Swiss-Prot
Match: ALG13_CANAL (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Candida albicans GN=ALG13 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  480 FTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAH 677
            F++SS+I  ++ +  L+ISHAG+GSI + L   KPLIV+VN+ LMDNHQ E+A++    K  YC +
Sbjct:  174 FSYSSNINKYIENVDLIISHAGTGSIIDCLHLNKPLIVIVNDKLMDNHQLEIAQQFT--KLNYCIY 237          
The following BLAST results are available for this feature:
BLAST of CX291459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ALG13_HUMAN4.900e-2547.62UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_MOUSE8.358e-2551.22UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_RAT1.092e-2451.22UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_SCHPO4.746e-2045.90UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
ALG13_YARLI6.854e-1940.16UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_ASPFU2.064e-1536.30UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
ALG13_YEAST1.479e-1334.59UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_KLULA2.135e-1235.44UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_CANAL8.972e-1148.48UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
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Properties
Property NameValue
Genbank descriptionC03008G02SK OF2 Citrus clementina cDNA clone C03008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291459 ID=CX291459; Name=CX291459; organism=Citrus clementina; type=EST; length=729bp
GCCAAGGAAAACTCTAATTTTCAATGCAAAACACACGCTGCCGTTGCAAA
CAGGCTTAACGCCCGCCCCTTGACACCGCTGCTTTCTGTTACTGCTGCCG
CGTGACGCGTGCTGTTTGTTGGATCGCTCACCACGGTTGTTGCCAGTCAA
TCGCCGACTGTGCTTGCTATTTTGCCAAGCTACGGCTTCACGGCCGTCAT
CAAAAGCTTAGTGGTGGTGTACATTTTGGACAAAACCGAATCATAGATAA
CGAGAAATTCGAGATGGGAGATACTAGGGATAGTGTGAGCTTGAAGAGAA
TTGTGTTCGTAACAGTCGGAACAACATGTTTTGATGCTCTTGTGAAAGCG
GTGGATACTTTAGAAGTAAAACAAGAGTTGACAAGAAGAGGATATACCCA
TCTTCTCATTCAAATGGGTCGAGGAACCTATGTACCTACTAAGTCCCTTG
GAGAAGACGGCCTCATGGCTGTAGACTACTTTACTTTTTCGTCAAGCATT
GCAGACCATCTAAGGTCTGCATCTCTTGTAATCAGTCATGCCGGGTCAGG
GAGCATATTTGAGACCTTACGGCATGGTAAACCTTTGATAGTGGTGGTGA
ATGAAGACTTAATGGACAATCATCAGAGTGAGCTAGCAGAAGAACTAGCA
GCGAGGAAGCATTTATATTGTGCTCATCCTCATCCCTTCATCAGGTTATA
GCTGGTATGGATTTGGAGTCTCTCCTACC
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