CX291466

Overview
NameCX291466
Unique NameCX291466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: SST2_SCHPO (AMSH-like protease sst2 OS=Schizosaccharomyces pombe GN=sst2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 3
Query:   72 PKSDKLVKYPNNIDLTPIEIPSLR-QPSESSIKIKTDSSNVEPEKSSVQSISTPN-DEIEIHRTEEPCSMISFETSEAPNSADVIRQPSPPPVLTEVQDLIAAMSPQVTETE----CQVGNSLSDAF-DRSEPLQ-LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            P  +K V Y +   L    +  L+  P  S+  +  DS  +    S +     P+ +      +  P S   FE +   +S  V    SP P L + +D+     P  T T        G     A+ +  +PL+ +++   +   F+ + K NT KNLETCGIL G L+   F+IT L+IP QE+TSD+C  T+E  +FE QDK +L
Sbjct:  132 PSLEKPVSYVDEPILEQWALSDLQILPPSSTDLLSPDSQKLSKSSSDLPQFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLV----SPEP-LDDNKDIQFIKKPIYTRTSEPRPKPAGTFKIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNL 334          
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: D1039_DICDI (Probable ubiquitin thiolesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 AAMSPQVTETECQVGNSLSDAFDRSEPLQ-LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            A  +P +T T  +     S+A  +   L+ + +   +   FM+LA++NT +++ETCGIL+G+L N  F IT +IIPKQE T+D+C    E EIFE Q +  L
Sbjct:  507 AVNTPSITPTTNKPNIDSSEASKKYSKLRKIIVHGEVFQEFMRLAENNTKRSIETCGILSGTLSNDVFRITTIIIPKQEGTTDTCNTIEEHEIFEYQLENDL 608          
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: STALP_PONAB (AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 45/131 (34.35%), Postives = 63/131 (48.09%), Query Frame = 3
Query:  291 SEAPNSADVIRQPS-PPPV---LTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            ++ PN +D     S  PPV   LT    L A  +  V    C V                 +   +   F++LA+SNT + +ETCGIL G L + +F IT +I+PKQ +  D C   N EE+F VQD+  L
Sbjct:  227 ADQPNKSDATNYASHSPPVNRALTPAATLSAVQNLVVEGLRCVV-----------------LPKDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDVENVEELFNVQDQHDL 340          
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: STALP_HUMAN (AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 45/131 (34.35%), Postives = 63/131 (48.09%), Query Frame = 3
Query:  291 SEAPNSADVIRQPS-PPPV---LTEVQDLIAAMSPQVTETECQVGNSLSDAFDRSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            ++ PN +D     S  PPV   LT    L A  +  V    C V                 +   +   F++LA+SNT + +ETCGIL G L + +F IT +I+PKQ +  D C   N EE+F VQD+  L
Sbjct:  227 ADQPNKSDATNYASHSPPVNRALTPAATLSAVQNLVVEGLRCVV-----------------LPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDL 340          
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: STABP_HUMAN (STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  486 FMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            F++LA +NT + +ETCGIL G L   +F IT ++IPKQ + SD C   NEEE+F +QD++ L
Sbjct:  267 FLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGL 328          
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: STABP_DANRE (STAM-binding protein-like OS=Danio rerio GN=stambp PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  453 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            QL +   +   F+KLA++NT + +ETCGIL G L    F +T +I+PKQ    D C   NEEE+F +QD+  L
Sbjct:  250 QLFVPAELCQRFLKLAETNTARAVETCGILCGKLMKNAFTVTHVIVPKQCGGPDYCDTENEEELFLIQDQNDL 322          
BLAST of CX291466 vs. ExPASy Swiss-Prot
Match: STALP_MOUSE (AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  462 ISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSL 671
            +S  +   F+ LA SNT + +ETCGIL G L + +F IT +++PKQ +  D C   N EE+F VQD+  L
Sbjct:  271 LSRDLCHKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGL 340          
The following BLAST results are available for this feature:
BLAST of CX291466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SST2_SCHPO1.376e-1531.25AMSH-like protease sst2 OS=Schizosaccharomyces pom... [more]
D1039_DICDI4.426e-1440.20Probable ubiquitin thiolesterase DG1039 OS=Dictyos... [more]
STALP_PONAB1.205e-1134.35AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=... [more]
STALP_HUMAN1.574e-1134.35AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=... [more]
STABP_HUMAN1.574e-1150.00STAM-binding protein OS=Homo sapiens GN=STAMBP PE=... [more]
STABP_DANRE1.574e-1143.84STAM-binding protein-like OS=Danio rerio GN=stambp... [more]
STALP_MOUSE5.982e-1144.29AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC03008H04SK OF2 Citrus clementina cDNA clone C03008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291466 ID=CX291466; Name=CX291466; organism=Citrus clementina; type=EST; length=675bp
GTCCAAATGCGGAAACCCTGTCCAGGCATTCTCTTTTGGGGCCAAATGGT
CTCTATGGTCATTGGCAGCCTCCAAAGAGTGATAAACTGGTCAAATATCC
TAACAACATAGACCTGACTCCCATTGAAATTCCCAGCCTACGGCAGCCTT
CAGAAAGTTCAATTAAAATAAAAACAGACAGTTCCAATGTTGAACCGGAG
AAATCAAGTGTGCAATCAATTTCTACTCCAAATGATGAAATTGAGATACA
TCGCACTGAGGAACCTTGTTCCATGATTTCTTTTGAAACATCAGAAGCCC
CTAATTCTGCAGACGTCATTAGACAACCTTCTCCTCCACCTGTACTTACT
GAAGTACAAGATTTGATTGCTGCCATGTCTCCTCAAGTTACTGAAACAGA
ATGCCAAGTTGGGAATTCATTGTCAGATGCTTTTGATCGTTCTGAACCCC
TGCAATTGCACATTTCGACCACAATGATGGATAACTTCATGAAGTTGGCG
AAGTCGAATACTGATAAGAATTTAGAAACTTGTGGTATTCTTGCAGGTTC
ACTTAAAAACAGAAAATTTTACATTACTGCTCTCATTATACCAAAGCAGG
AATCAACATCAGATTCATGTCAGGCTACAAACGAAGAAGAAATATTTGAA
GTGCAAGATAAGCGATCTCTTTTTC
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