CX291481

Overview
NameCX291481
Unique NameCX291481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9684 contig Ccv1_Contig9684:20..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291481 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.048e-43
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = 3 
Query:   15 MEEAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKDVSIENRHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTT 332
            MEEAKG VKHVLLA FK+G + ++I++LIK YANLVNLIEPMK+F WGKDVSIEN HQG+THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+
Sbjct:    1 MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTS 106
[Close]
BLAST of CX291481 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 39/95 (41.05%), Postives = 66/95 (69.47%), Query Frame = 3 
Query:   39 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKDV-SIENRHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 320
            KH+++ KFKE T   ++D+++K   NLV+ I+ +KSF+WG+D  S +   QGFTH F  TFE+ +G   + +HP HVE++  F A ++K++++D+
Sbjct:    7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDF 98
The following BLAST results are available for this feature:
BLAST of CX291481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POP3_ARATH6.048e-4376.42Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
Y5258_ARATH9.722e-1741.05Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC03009D01SK OF2 Citrus clementina cDNA clone C03009D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291481 ID=CX291481; Name=CX291481; organism=Citrus clementina; type=EST; length=594bp
ATAAAGGCAGAGATATGGAAGAAGCTAAAGGAGTGGTGAAGCACGTACTT
CTGGCCAAGTTCAAAGAAGGGACTGCTCAAGATCAAATTGATCAGCTCAT
CAAAGACTATGCAAATCTTGTGAATCTCATTGAACCCATGAAGTCTTTCC
AATGGGGCAAGGATGTGAGCATTGAGAATCGTCATCAGGGTTTCACTCAT
ATTTTTGAATCTACCTTTGAGAGCACAGAGGGTGTTGCAGAGTATGTAGC
TCATCCGGCACATGTTGAATACGCAAACTTGTTCCTGGCCAACTTGGAGA
AAGTTCTCGTGATTGACTACAAACCGACAACAGTACGTGTCTGAGTTGTA
CTAGTAGGGAAGTGATCAGTCTTCCATGTGGTTGTTATTTGAATATTGTG
TCCGTTTTCTTGAACAATATTGGGTGACTTCATATGTATGTGAAATTGGT
GGTGGTGAAACCCAAGAATTTATGTATTTGGATATAATGATATGACAGTA
AGGGTAGTTTGAATACTCTCATATTTATAGATTCTCCTTCTGGCTTGATT
AATAATCGTGTTTCTGTATTTGTGTTATAAAATTAAATCATTGC
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