CX291484

Overview
NameCX291484
Unique NameCX291484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9574 contig Ccv1_Contig9574:348..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.941e-31
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEIA 232
            LKAV ESV++P RYFDNNL+GTINLY+ MAK+NCKK+VFSSSAT+YGQPEKIPCVEDF   AMNPYGRTKL+ EEIA
Sbjct:   92 LKAVGESVENPRRYFDNNLVGTINLYEVMAKHNCKKMVFSSSATVYGQPEKIPCVEDFKLQAMNPYGRTKLFLEEIA 168          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.556e-31
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEIA 232
            LKAV ESV++P RYFDNNL+GTINLY+ MAKYNCK +VFSSSAT+YGQPEKIPC+EDF   AMNPYGRTKL+ EEIA
Sbjct:   93 LKAVGESVENPRRYFDNNLVGTINLYETMAKYNCKMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIA 169          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.414e-25
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEIA 232
            LK V ESV +P  Y+DNNL+ TINL+Q M+K+NCKKLV SSSAT+YGQP++IPCVED    AMNPYGR+KL+ EE+A
Sbjct:   96 LKGVGESVLNPSNYYDNNLVATINLFQVMSKFNCKKLVISSSATVYGQPDQIPCVEDSNLHAMNPYGRSKLFVEEVA 172          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.162e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+DNNLIGTI L++ MA + CKKLVFSSSAT+YG P+++PC E+FP  A NPYGRTKL  EEI
Sbjct:   89 LKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGLPKEVPCTEEFPLSAANPYGRTKLIIEEI 164          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.666e-24
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ESV+ P  Y++NNL+GTI L + MA++ CK LVFSSSAT+YG P+++PC E+FP  A+NPYGRTKL+ EEI
Sbjct:   89 LKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEI 164          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ESV+ P  Y++NN++GT+ L + MA+Y CK LVFSSSAT+YG P+++PC E+ P  A NPYGRTKL+ EEI
Sbjct:   88 LKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEI 163          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.048e-20
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ESV  P +Y+ NNL GT  L +AM KY  KK+VFSSSAT+YG PE  P  EDFP GA NPYG+TKL  E+I
Sbjct:   83 LKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIVFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQI 158          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.977e-19
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ES + P +Y++NN+ GT+ L   M K+  KKLVFSSSAT+YG P  +P  EDFP  A NPYGRTKL+ E I
Sbjct:   88 LKAVGESNKLPLKYYNNNIAGTLTLLNLMDKHRVKKLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLYVEGI 163          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.384e-17
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+DNN+ GT+ L  AM   N K  +FSSSAT+YG   KIP VE FP G   +PYG++KL  E+I
Sbjct:   83 LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.031e-17
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKLWCEEI 229
            LKAV ESV  P  Y+DNN+ GT+ L  AM   N K L+FSSSAT+YG   KIP VE FP G   +PYG++KL  E+I
Sbjct:   83 LKAVGESVARPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI 159          
The following BLAST results are available for this feature:
BLAST of CX291484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GALE1_PEA2.941e-3180.52UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE1_ARATH8.556e-3179.22UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE1_CYATE1.414e-2567.53UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE2_CYATE9.162e-2568.42UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE2_ARATH2.666e-2463.16UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE3_ARATH5.027e-2360.53UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE_BACSU1.048e-2063.16UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_DICDI1.977e-1957.89UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GALE_ECOLI5.384e-1755.84UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_SALTY7.031e-1755.84UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]

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Properties
Property NameValue
Genbank descriptionC03009D04SK OF2 Citrus clementina cDNA clone C03009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291484 ID=CX291484; Name=CX291484; organism=Citrus clementina; type=EST; length=235bp
CCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATA
ATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAAC
TGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGA
AAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATG
GACGAACTAAGCTATGGTGCGAAGAAATTGCTTTT
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