CX291496

Overview
NameCX291496
Unique NameCX291496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length185
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.379e-23
Identity = 49/61 (80.33%), Postives = 58/61 (95.08%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPA 185
            Y+L H+VRTH+GADDK++ CV+E+EDKEG VGI+LSKDLMAIAGEALK+NITTIGPLVLPA
Sbjct:  295 YKLSHLVRTHRGADDKSFYCVYEQEDKEGHVGINLSKDLMAIAGEALKANITTIGPLVLPA 355          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.429e-22
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            YRLVHVVRTH+GADDKA+RCV++E+D  G+ G+SLSKDLMAIAGE LK+NITT+GPLVLP
Sbjct:  318 YRLVHVVRTHRGADDKAFRCVYQEQDDTGRTGVSLSKDLMAIAGETLKTNITTLGPLVLP 377          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.438e-22
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPA 185
            Y+L H+VRTH+GADDK+Y CV E+EDK G VGI+LSKDLM IAGEALK+NITTIGPLVLPA
Sbjct:  290 YKLCHLVRTHRGADDKSYNCVMEQEDKNGNVGINLSKDLMTIAGEALKANITTIGPLVLPA 350          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.005e-21
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y+LVH VRTHKGA +KA+ CV++E+D  GK G+SLSKDLMAIAGEALK+NITT+GPLVLP
Sbjct:  314 YKLVHTVRTHKGAVEKAFNCVYQEQDDNGKTGVSLSKDLMAIAGEALKANITTLGPLVLP 373          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.523e-19
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKE----GKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y+L+H VRTHKGADD A+ CV++ ED      GK+G+SLSK+LMAIAGEALK+NITT+GPLVLP
Sbjct:  317 YQLIHTVRTHKGADDNAFGCVYQREDNNAEETGKIGVSLSKNLMAIAGEALKTNITTLGPLVLP 380          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.295e-19
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y+LVH VRTHKG+D+ A+ CV++E+D+  K G+SLSKDLMAIAGEALK+NIT++GPLVLP
Sbjct:  288 YKLVHTVRTHKGSDENAFNCVYQEQDECLKTGVSLSKDLMAIAGEALKTNITSLGPLVLP 347          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.587e-19
Identity = 38/60 (63.33%), Postives = 55/60 (91.67%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y LV+VVRTHKG+DDK Y CV+++ED+ G +G+SL+++LM++AG+ALK+NITT+GP+VLP
Sbjct:  328 YSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLP 387          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.635e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y LV  VRTHKGADDK + C+ +EED   K+G++LSK+LMA+AG+ALK+NITT+GPLVLP
Sbjct:  306 YELVDTVRTHKGADDKCFGCITQEEDSASKIGVTLSKELMAVAGDALKTNITTLGPLVLP 365          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.136e-18
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEG--KVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y+L+H VRTHKG+DD A+ CV++ ED +   ++G+SLSK+LMAIAGEALK+NITT+GPLVLP
Sbjct:  311 YQLIHTVRTHKGSDDNAFNCVYQREDNDDNKQIGVSLSKNLMAIAGEALKTNITTLGPLVLP 372          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.116e-18
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            YRL H+VRTHK ADD+++R V++EED++G  G+ +S+DLM + GEALK+NITT+GPLVLP
Sbjct:  327 YRLEHIVRTHKAADDRSFRSVYQEEDEQGFKGLKISRDLMEVGGEALKTNITTLGPLVLP 386          
The following BLAST results are available for this feature:
BLAST of CX291496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
KCS6_ARATH8.379e-2380.333-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH1.429e-2278.333-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS5_ARATH2.438e-2278.693-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH6.005e-2175.003-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS19_ARATH2.523e-1968.753-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS2_ARATH3.295e-1970.00Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS1_ARATH9.587e-1963.333-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS11_ARATH1.635e-1866.673-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS17_ARATH2.136e-1866.133-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS10_ARATH8.116e-1863.333-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC03009G10SK OF2 Citrus clementina cDNA clone C03009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291496 ID=CX291496; Name=CX291496; organism=Citrus clementina; type=EST; length=185bp
AGTACCGGCTGGTTCACGTGGTTCGAACCCACAAAGGAGCTGACGACAAG
GCTTATCGCTGCGTGTTTGAGGAGGAAGACAAAGAGGGCAAAGTTGGGAT
TTCGCTGTCGAAAGATCTCATGGCAATAGCTGGGGAAGCTCTCAAATCGA
ACATCACCACGATTGGTCCCCTGGTCCTTCCTGCT
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