CX291499

Overview
NameCX291499
Unique NameCX291499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:217..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 5.566e-87
Identity = 156/203 (76.85%), Postives = 177/203 (87.19%), Query Frame = 2
Query:    5 ASCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            A CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL
Sbjct:   22 AYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.240e-86
Identity = 155/201 (77.11%), Postives = 176/201 (87.56%), Query Frame = 2
Query:   11 CLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL
Sbjct:   24 CLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.050e-85
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 2
Query:   11 CLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            CLVAIGGSE+FYS FE ELA  IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL
Sbjct:   24 CLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.377e-84
Identity = 151/201 (75.12%), Postives = 175/201 (87.06%), Query Frame = 2
Query:   11 CLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            CLVA+GGSE+FYS FEAEL D IP+V T+I GTRIIGR+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L
Sbjct:   24 CLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 7.523e-84
Identity = 149/200 (74.50%), Postives = 175/200 (87.50%), Query Frame = 2
Query:   14 LVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            LVA+GGSE+FYS FEAEL DV+PVV T+IGGTRIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEE+IADVL VEVFRQT+AGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VI AGL VNDW AF G DTTATEL+V ES+FKL
Sbjct:   25 LVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 308.531 bits (789), Expect = 1.676e-83
Identity = 153/201 (76.12%), Postives = 175/201 (87.06%), Query Frame = 2
Query:   11 CLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIGRL  GN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEE+IADVL VEVFRQTIA N LVGSY   SN+GG+VHP TSI+D DELS+LLQVPLVAGTVNRGSEV+AAG+ VNDW +F G +TTATE+SVIESVFKL
Sbjct:   24 CLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 7.785e-81
Identity = 149/201 (74.13%), Postives = 171/201 (85.07%), Query Frame = 2
Query:   11 CLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            CLV   GS+ F  T E  LAD IPVV+TSI GTRI+GRL AGNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEE+IADVLGVEVFRQT++GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVPLVAGTVNRG+E +AAG  VNDWTA  G+DTTATE+SVIES+F L
Sbjct:   24 CLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFAL 224          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.328e-80
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 2
Query:    5 ASCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 520
            A CLVAIGGSE+FYSTFE ELAD IPVVKTSI GTRIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VALTHTDLD+ETEE+IADVLGVEVF QTIAGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI
Sbjct:   22 AYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.374e-77
Identity = 142/204 (69.61%), Postives = 173/204 (84.80%), Query Frame = 2
Query:    5 ASCLV-AIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            A CLV A   S +F++ +E++L  VIP+V TSIGG+  IG LC GNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQTIA N LVGSYCS SN GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+VI+AGLTVNDWTAFCGSDTTA ELSV+ ++FKL
Sbjct:   23 AYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKL 226          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.278e-71
Identity = 127/201 (63.18%), Postives = 162/201 (80.60%), Query Frame = 2
Query:   11 CLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            CLV +GG+++FYS  EAEL+D+IPVV TSI  TRI+GRL  GN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ LLQ+P+VAGT NRGSE+I AG+ VNDW AFCG D+T+TELSV+ES+FKL
Sbjct:   24 CLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKL 224          
The following BLAST results are available for this feature:
BLAST of CX291499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_MOUSE5.566e-8776.85Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN1.240e-8677.11Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN1.050e-8576.62Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_YEAST3.377e-8475.12Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_SCHPO7.523e-8474.50Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME1.676e-8376.12Probable eukaryotic translation initiation factor ... [more]
IF6_DICDI7.785e-8174.13Probable eukaryotic translation initiation factor ... [more]
IF6_BETVU1.328e-8087.21Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_ARATH1.374e-7769.61Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL3.278e-7163.18Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC03009H04SK OF2 Citrus clementina cDNA clone C03009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291499 ID=CX291499; Name=CX291499; organism=Citrus clementina; type=EST; length=613bp
GAGGGCTTCTTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCA
CATTTGAGGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATT
GGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCT
TCTCTTGCCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACA
GCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCC
CTGGGCAATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGA
TCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAG
TTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCC
TTCTCCAACAGAGGAGGCTTGGTCCACCCTCACACATCCATTGAAGACTT
GGATGAACTTTCAACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGA
ACCGTGGAAGCGAAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACA
GCATTCTGTGGATCAGACACCACAGCAACTGAACTCTCTGTTATTGAGAG
TGTTTTCAAGTTG
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