CX291501

Overview
NameCX291501
Unique NameCX291501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length319
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11218 contig Ccv1_Contig11218:409..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.444e-14
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   10 PDVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            P+ +E+      DEF+S   +  +PKILITT      R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+ PTAH
Sbjct:  118 PNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220          
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.444e-14
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   10 PDVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            P+ +E+      DEF+S   +  +PKILITT      R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+ PTAH
Sbjct:  118 PNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220          
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.069e-13
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   10 PDVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            P  +E+      DEF+    +   PKILITT      R   F  +L S+IPNS  Y R    LKKII     +D+T ++V++ +R+ P+ L++  LPD PTAH
Sbjct:  112 PADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAH 214          
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.069e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   10 PDVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            P+ +E+      DEF+S   +  +PKILITT      R      +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+ PTAH
Sbjct:  118 PNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220          
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.069e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   10 PDVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            P+ +E+      DEF+S   +  +PKILITT      R      +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+ PTAH
Sbjct:  118 PNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220          
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   10 PDVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            P+ +E+      DEFS+   +   PK+LITT      R   F  +L +VIP+++ Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPD PTAH
Sbjct:   99 PEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAH 201          
BLAST of CX291501 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.529e-11
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   13 DVDELFAGNDADEFSSILKQGCAPKILITTCRFNPSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR*PDALLIIGLPDVPTAH 318
            D +EL      D+FSS  ++   PK+LIT      ++   F  EL  + PN+    R    +KKI + A++++FT +++V+ +RR P+ LL+I LP+ PTAH
Sbjct:  162 DNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAH 263          
The following BLAST results are available for this feature:
BLAST of CX291501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RPF1_PONAB5.444e-1440.78Ribosome production factor 1 OS=Pongo abelii GN=BX... [more]
RPF1_HUMAN5.444e-1440.78Ribosome production factor 1 OS=Homo sapiens GN=BX... [more]
RPF1_XENLA2.069e-1338.83Ribosome production factor 1 OS=Xenopus laevis GN=... [more]
RPF1_RAT2.069e-1339.81Ribosome production factor 1 OS=Rattus norvegicus ... [more]
RPF1_MOUSE2.069e-1339.81Ribosome production factor 1 OS=Mus musculus GN=Bx... [more]
RPF1_DANRE1.135e-1134.95Ribosome production factor 1 OS=Danio rerio GN=bxd... [more]
RPF1_DROME2.529e-1136.27Probable ribosome production factor 1 OS=Drosophil... [more]
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Properties
Property NameValue
Genbank descriptionC03009H08SK OF2 Citrus clementina cDNA clone C03009H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291501 ID=CX291501; Name=CX291501; organism=Citrus clementina; type=EST; length=319bp
GTATGCCGGCCTGACGTCGATGAGCTATTTGCGGGTAATGATGCTGATGA
GTTTAGTTCTATTCTAAAGCAAGGATGCGCCCCGAAGATATTGATCACTA
CATGTCGTTTCAATCCCAGTAGAGGACCGGCCTTTATATCAGAGTTACTG
TCTGTGATCCCAAATTCTCACTATTACAAGAGAGGAACCTATGATTTGAA
GAAGATTATAGAATATGCAAAGAAGAAGGACTTCACTTCTATAATAGTTG
TTCACACCAATAGGAGGTAACCAGATGCTCTACTAATCATTGGCCTGCCT
GACGTACCTACTGCCCATT
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