CX291506

Overview
NameCX291506
Unique NameCX291506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15097 contig Ccv1_Contig15097:24..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291506 vs. ExPASy Swiss-Prot
Match: AOX4_ARATH (Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.658e-75
Identity = 138/208 (66.35%), Postives = 159/208 (76.44%), Query Frame = 1 
Query:   73 SVASFNTIKTLRFNPPSSPRSLSRKFCRVQATILQDXXXXXXXXXSSPLKNF----PNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 684
            +V+  ++ + L   P SS R L R   RVQATILQD         S   +      P ++    + S SA E W+IK EQ VN+ LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA+ETY
Sbjct:   27 AVSYSSSHRLLHHLPLSSRRLLLRNNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNVFLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETY 234
The following BLAST results are available for this feature:
BLAST of CX291506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AOX4_ARATH4.658e-7566.35Alternative oxidase 4, chloroplastic/chromoplastic... [more]
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Properties
Property NameValue
Genbank descriptionC03010A05SK OF2 Citrus clementina cDNA clone C03010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291506 ID=CX291506; Name=CX291506; organism=Citrus clementina; type=EST; length=684bp
TTGGTAACAGAAATGATGACAACTCTCTCTCAAACAGTATCGGTCTTTTC
CAATAAAGCAATAAATCTTAAAAGCGTAGCTTCTTTCAACACCATCAAGA
CTTTGCGTTTCAACCCTCCCTCTTCACCTCGATCGCTATCCAGGAAGTTT
TGTCGAGTTCAAGCCACAATTTTGCAAGATGAAGAGGAGAAAGTGGTGGT
AGAGGAGTCATCTCCACTCAAGAATTTTCCAAATGATGATGAGCCACCCG
AGACTGGGTCAGCTAGTGCATTGGAAAAATGGGTTATCAAGTTTGAACAA
TCTGTTAATATCTTACTTACGGAATCTGTGATAATGGTACTTGATGCTTT
GTATCGTGACCGGGATTATGCAAGGTTCTTTGTACTGGAGACTATTGCTA
GAGTTCCTTATTTTGCATTTATTTCTGTTCTGCACATGTATGAGAGTTTT
GGTTGGTGGAGAAGAGCAGATTACCTGAAAGTTCATTTTGCTGAGAGCTG
GAATGAGATGCATCACTTGCTCATAATGGAAGAATTGGGAGGAAATGCTT
GGTGGTTCGATCGCTTTCTTGCGCAGCATATAGCCGTTGCTTATTATTTT
GTGACAGTCTTCATGTATGTAATAAGCCCAAGAATGGCATATCACTTTTC
GGAATGTGTGGAGAGCCATGCTTTTGAAACTTAT
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