CX291507

Overview
NameCX291507
Unique NameCX291507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291507_ssr19 microsatellite CX291507_ssr19:19..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX291507 vs. ExPASy Swiss-Prot
Match: EMF2_ARATH (Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.580e-55
Identity = 109/175 (62.29%), Postives = 132/175 (75.43%), Query Frame = 1 
Query:  202 MPGIPLVARETSSYSRSTDQMCREDARVHXXXXXXXXXXXXXXXYCKPVELYNILQRRAIRNPSFLQRCLSYQIHEKHNRRIQMTISLSETVNEGLQARFPFPLYILLGRLVSGTTVSEYSAVYRFSRACILTNFTGVEGSTQVQANFVLPEISRLQLKGKSCTLAILLVNFAGS 726
            MPGIPLV+RETSS SRST+QMC ED+R+                YCKPVELYNI+QRRAIRNP FLQRCL Y+I  KH RRIQMT+ LS  ++ G+Q +  FPLYILL RLVS   V+EYSAVYRFSRACILT   GV+G +Q QANF+LP+++RL L+ KS +LAIL ++FAG+
Sbjct:    1 MPGIPLVSRETSSCSRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIEAKHKRRIQMTVFLSGAIDAGVQTQKLFPLYILLARLVSPKPVAEYSAVYRFSRACILTGGLGVDGVSQAQANFLLPDMNRLALEAKSGSLAILFISFAGA 175
The following BLAST results are available for this feature:
BLAST of CX291507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EMF2_ARATH4.580e-5562.29Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC03010A06SK OF2 Citrus clementina cDNA clone C03010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291507 ID=CX291507; Name=CX291507; organism=Citrus clementina; type=EST; length=730bp
ATCTAACTCTCACTCTTATCTCTCTCTCAAACGCTGCGGATTCCTGAAGG
AACTTCTCGTTAACCTAAAGCTTCCTCAAGTTTACTTCCAAATATCTAAA
TTAACTTTTCTTAATCTTAGGGTTTTTATTTCTATAAGGTATTTGAGTTG
GCTTTGCTGAGGAGCTATGACGAATTCGAACTTCGGTGTTATCTAGGAAG
AATGCCGGGCATCCCTCTAGTGGCACGTGAAACTTCCTCATACTCCAGAA
GCACAGATCAGATGTGCCGTGAAGATGCTCGTGTGCATTTATCTGCAGAA
GAGGAAATTGCTGCTGAAGAGAGTCTGTCAATTTATTGCAAACCTGTAGA
ACTTTACAACATTCTTCAACGGCGTGCTATAAGAAATCCGTCATTTCTTC
AAAGATGTTTGAGCTACCAAATTCATGAAAAGCACAATCGGAGAATACAA
ATGACAATTTCCCTGTCAGAAACTGTTAATGAAGGTTTACAAGCTCGGTT
TCCCTTTCCTTTGTACATTTTGCTGGGAAGATTAGTATCTGGCACTACAG
TTTCAGAGTATTCTGCTGTATATCGCTTCAGCCGAGCGTGCATCTTGACC
AATTTCACTGGAGTTGAGGGCAGTACTCAGGTCCAGGCAAATTTTGTCCT
CCCCGAGATTAGTAGGCTGCAGCTGAAAGGCAAGTCTTGCACACTTGCAA
TCTTGCTTGTCAACTTTGCTGGAAGCCCAA
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