CX291513

Overview
NameCX291513
Unique NameCX291513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.469e-87
Identity = 158/180 (87.78%), Postives = 166/180 (92.22%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 639
            MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI  AK           LKGAV LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 322.398 bits (825), Expect = 1.469e-87
Identity = 158/180 (87.78%), Postives = 166/180 (92.22%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 639
            MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI  AK           LKGAV LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.454e-60
Identity = 114/179 (63.69%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG  FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI  +K           L+ A+ ++FANKQD+  A+  + ++ AL L  +K+R+W IFKT A KG GL E M+WL  TLKS
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.454e-60
Identity = 114/179 (63.69%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG  FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI  +K           L+ A+ ++FANKQD+  A+  + ++ AL L  +K+R+W IFKT A KG GL E M+WL  TLKS
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.597e-60
Identity = 113/179 (63.13%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG  FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI  +K           L+ A+ ++FANKQD+  A+  + ++ +L L  +K+R+W IFKT A KG GL E M+WL  TLKS
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.922e-60
Identity = 113/179 (63.13%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG  FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI  +K           L+ A+ ++FANKQD+  A+  + ++ +L L  +K+R+W IFKT A KG GL E M+WL  TLKS
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 7.110e-58
Identity = 105/179 (58.66%), Postives = 134/179 (74.86%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG+ FS++FS+LFG+KE RIL++GLD AGKTT+LY+L++GEVV+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTE +I+VVDS+D  RI  A+           ++ AV L+FANKQDLP A+  A ++E L LH I+ R W I  TCA  GEGL+EG++WLS  LK+
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKN 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 223.402 bits (568), Expect = 9.286e-58
Identity = 109/171 (63.74%), Postives = 129/171 (75.44%), Query Frame = 1
Query:  124 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            F  L G++E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE V Y N+KFQVWDLGGQTSIRPYWRCY+ NT+A+IYVVDS+D DRI  +K           L GA+ ++ ANKQD+ G +  A V  AL L  +KNR + IFKT A KGEGL + MDWLSNTL+S
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 178          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.213e-57
Identity = 106/179 (59.22%), Postives = 134/179 (74.86%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG+  S++FS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY NI F VWD+GGQ  IR  WR Y+ NTE VI+V+DS+D  RI  A+           L+ AV L+FANKQDLP A+  A ++E L LH I+NR W I  TCA  GEGL+EG++WLSN LK+
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKN 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.069e-57
Identity = 106/179 (59.22%), Postives = 134/179 (74.86%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG+  S++FS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY NI F VWD+GGQ  IR  WR Y+ NTE VI+VVDS+D  RI  A+           L+ A  L+FANKQDLP A+  A ++E L LH I+NR W I  TCA  GEGL+EG++WLSN+LK+
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          
The following BLAST results are available for this feature:
BLAST of CX291513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF3_ARATH1.469e-8787.78ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP1.469e-8787.78ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_RAT4.454e-6063.69ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE4.454e-6063.69ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_HUMAN7.597e-6063.13ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN9.922e-6063.13ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARF_ASHGO7.110e-5858.66ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARL1_DROME9.286e-5863.74ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARF2_YEAST1.213e-5759.22ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF1_YEAST2.069e-5759.22ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03010B01SK OF2 Citrus clementina cDNA clone C03010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291513 ID=CX291513; Name=CX291513; organism=Citrus clementina; type=EST; length=703bp
AGCAGTTTTTTCGAGTGAGCTGTTACGAAAGTTAATCGACCATCGATTAG
GAGGAGCAATATCCCCAGCGATTGACAGCTACAAAATCAGAACAAAAAAA
TGGGCATAATGTTTAGTAGAATGTTCTCTTCTCTCTTCGGCAACAAAGAA
GCTCGAATCCTGGTACTCGGTCTCGACAATGCCGGCAAAACCACAATCCT
CTATCGGCTACAAATGGGAGAAGTAGTGTCCACAATACCAACAATTGGGT
TTAACGTTGAAACGGTACAGTACAACAACATCAAGTTCCAAGTTTGGGAT
TTAGGTGGGCAAACAAGCATAAGGCCATACTGGAGATGCTATTTCCCAAA
TACTGAAGCTGTGATATATGTTGTTGATTCAAGTGACACTGATAGAATTC
AAACAGCCAAAGAGGAATTTCATGCAATTTTAGAGGAGGAAGAGCTGAAA
GGTGCAGTTGCCCTCATTTTCGCTAACAAGCAGGACCTCCCTGGTGCACT
TGATGATGCTGCTGTGTCTGAGGCCTTGGAGTTGCACAAAATCAAAAACC
GCCAGTGGGCCATTTTTAAAACTTGTGCAATAAAGGGTGAAGGCCTCTTT
GAAGGCATGGACTGGTTGAGTAATACTCTCAAGTCTGGGAGGCAGTTACT
TCATTTGTGAAATTTATGGGGCAAGCATACCGTCAAGATGTCAATCTCCA
GTC
back to top