CX291518

Overview
NameCX291518
Unique NameCX291518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49
Identity = 91/173 (52.60%), Postives = 115/173 (66.47%), Query Frame = 2
Query:   92 HYNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            +YN +DF  +    + F+IKSYSEDD+H+SIKY +W ST HGNK+L +AY           G  P++L FSVN S  FCGVAEM   VD+      W QDKW G F V+W  +KDVPN+ LRHI L NNENKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEK
Sbjct:  397 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMN-------GKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEK 562          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49
Identity = 91/173 (52.60%), Postives = 115/173 (66.47%), Query Frame = 2
Query:   92 HYNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            +YN +DF  +    + F+IKSYSEDD+H+SIKY +W ST HGNK+L +AY           G  P++L FSVN S  FCGVAEM   VD+      W QDKW G F V+W  +KDVPN+ LRHI L NNENKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEK
Sbjct:  397 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMN-------GKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEK 562          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49
Identity = 91/173 (52.60%), Postives = 115/173 (66.47%), Query Frame = 2
Query:   92 HYNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            +YN +DF  +    + F+IKSYSEDD+H+SIKY +W ST HGNK+L +AY           G  P++L FSVN S  FCGVAEM   VD+      W QDKW G F V+W  +KDVPN+ LRHI L NNENKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEK
Sbjct:  398 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMN-------GKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEK 563          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.890e-49
Identity = 89/172 (51.74%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   95 YNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            YN ++F  +    + F+IKSYSEDD+H+SIKY +W ST HGNK+L  A+              P++L FSVN S  FCGVAEM  PVD+      W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEK
Sbjct:  377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG-------PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEK 541          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.890e-49
Identity = 89/172 (51.74%), Postives = 114/172 (66.28%), Query Frame = 2
Query:   95 YNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            YN ++F+ +    + F+IKSYSEDD+H+SIKY +W ST HGNK+L SA+              P++L FSVN S  FCGVAEM  PVD+      W QDKW G F V+W  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEK
Sbjct:  377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG-------PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEK 541          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 91/173 (52.60%), Postives = 113/173 (65.32%), Query Frame = 2
Query:   92 HYNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            +YN +DF  +  + + F+IKSYSEDD+H+SIKY +W ST HGNK+L +AY           G  P++L FSVN S  FCGVAEM   VD+      W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI       TS+FDDF +YEK
Sbjct:  403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLN-------GKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEK 568          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 91/173 (52.60%), Postives = 113/173 (65.32%), Query Frame = 2
Query:   92 HYNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            +YN +DF  +  + + F+IKSYSEDD+H+SIKY +W ST HGNK+L +AY           G  P++L FSVN S  FCGVAEM   VD+      W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI       TS+FDDF +YEK
Sbjct:  403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLN-------GKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEK 568          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 91/173 (52.60%), Postives = 113/173 (65.32%), Query Frame = 2
Query:   92 HYNEEDFQVDYVDAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEK 610
            +YN +DF  +  + + F+IKSYSEDD+H+SIKY +W ST HGNK+L +AY           G  P++L FSVN S  FCGVAEM   VD+      W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI       TS+FDDF +YEK
Sbjct:  403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLN-------GKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEK 568          
BLAST of CX291518 vs. ExPASy Swiss-Prot
Match: YD374_YEAST (YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae GN=YDR374C PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 65/159 (40.88%), Postives = 97/159 (61.01%), Query Frame = 2
Query:  128 DAKFFVIKSYSEDDVHKSIKYGVWSSTSHGNKKLQSAYEDAQKLAAGKPGGCPIFLFFSVNASSQFCGVAEMIGPVDFYKDMDFWQQD-KWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMY 601
            +++FFVIKS S   V +S   G+WSST  GNK+L  AY+           G  +FLFFS+N S +FCGVAEM+  +    D   W+ + K+  +F V+W I++D+ N SL+  ++ +NE KP+T+SRDTQEI ++ G+ ++ +FK    D   F D  Y
Sbjct:  154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNS-------GAKVFLFFSINTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPITHSRDTQEIPYSIGISIINLFKTQDSDIFSFLDETY 305          
The following BLAST results are available for this feature:
BLAST of CX291518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YTHD2_MACFA4.626e-4952.60YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN4.626e-4952.60YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN4.626e-4952.60YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_MOUSE7.890e-4951.74YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD1_HUMAN7.890e-4951.74YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB1.346e-4852.60YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE1.346e-4852.60YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN1.346e-4852.60YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YD374_YEAST4.809e-3040.88YTH domain-containing protein YDR374C OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionC03010B06SK OF2 Citrus clementina cDNA clone C03010B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291518 ID=CX291518; Name=CX291518; organism=Citrus clementina; type=EST; length=612bp
CAGCAGGTCAAAAGATCAATTGGCTGTTCAAGCATACACATCTAAAGCTG
GTGTTACTGATGCTGAAGGAAACATTATTATATGCACTGAACATTATAAC
GAGGAAGATTTCCAAGTTGACTACGTTGATGCAAAATTTTTCGTAATTAA
ATCATATAGCGAGGATGATGTGCACAAGAGCATCAAATATGGTGTCTGGT
CATCTACTTCCCATGGAAACAAGAAGCTACAGAGTGCTTATGAAGATGCA
CAGAAACTAGCTGCAGGGAAACCTGGAGGATGTCCTATCTTCCTGTTCTT
TTCTGTTAATGCAAGTAGTCAATTCTGTGGTGTTGCCGAGATGATTGGTC
CTGTTGACTTTTACAAGGATATGGATTTTTGGCAGCAAGACAAATGGAGT
GGGAGCTTCCCTGTGAAGTGGCACATCATCAAAGATGTGCCAAATACCTC
CTTAAGGCACATCATATTACGGAACAATGAGAATAAGCCCGTGACTAATA
GCAGAGATACACAAGAGATAATGCATACAGAAGGCCTGGAGATGCTGAAG
ATATTTAAAAATCATCCTCGAGATACTTCGTTATTTGATGACTTTATGTA
TTACGAAAAGCG
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