CX291519

Overview
NameCX291519
Unique NameCX291519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.587e-42
Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   19 KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEM 717
            +R+ FT+PPLVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+EK N  +    +  LI+ I  ++
Sbjct:  523 QRIRFTLPPLVFAAYQLAFRYK--ENSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDL 754          
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42
Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   19 KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEM 717
            +R+ FT+PPLVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+EK N  +    +  LI+ I  ++
Sbjct:  523 QRIRFTLPPLVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDL 754          
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42
Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   19 KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEM 717
            +R+ FT+PPLVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+EK N  +    +  LI+ I  ++
Sbjct:  523 QRIRFTLPPLVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDL 754          
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.540e-32
Identity = 80/201 (39.80%), Postives = 116/201 (57.71%), Query Frame = 1
Query:  136 VFQLLNQTIETLY-GVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEMQS 723
            +++ +N  I  LY    + EL L LYL  AE A+  +    AYEFFTQA+ +YEE + DS  Q   + +IIG LQ+   F V++ DTL  K T Y++KLLKKPDQC  +Y  SHL+W     +D    +D +RVL CL+++L+IA+A             S+ LF+ IL +Y Y++++    I A  I  LI+L    M+S
Sbjct:  534 LWEFVNTCINVLYKNGDSLELCLALYLSAAEMADQENYPDFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLT-------SLKLFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727          
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.105e-30
Identity = 84/258 (32.56%), Postives = 141/258 (54.65%), Query Frame = 1
Query:   31 FTVPPLVFSSLKLVRQLQ---------GPEENPFGEEGSTTPKKVFQLLNQTIETLYGV---PAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH-VFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-----------KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFF---EKGNTQINAAAIQSLIELITAEMQS 723
            +T P ++ +  KL+R+ +          P+        S   K++F+ +++ I  ++        +L L+L LQCA  A+   L  ++Y+FF+QA+ ++EE +SDS+ Q+ A+  I  +LQ+   ++     D+L  + T + +KLLKK DQCRAVY CSHL+W  +  N+           +DG+RVL CL+R+LR+A++          +  S  L VEILN+ +Y+F   ++  T I+   I  LIELI   ++S
Sbjct:  582 YTFPAIITNFWKLMRKCRMIQEYLLKKRPDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLILKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKS 832          
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 72/237 (30.38%), Postives = 126/237 (53.16%), Query Frame = 1
Query:   22 RLPFTVPPLVFSSLKLVRQLQGP--------EENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELI 705
            R+  T+ PLVF SL+ +R  +          +EN +   GS    K+F  +++TI+ L  +   +L+ RLYLQ  +  +   L     E   +A ++++E+I+D +AQV A+ L+I TL  + +   E  ++L  +    +++LL   DQ + +  CSHLFWVD+     ++ + VL  LK+AL I      +SN +    G+   FV+ILN+ +++ +K    +    +  L+ELI
Sbjct:  526 RIRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGS----KIFTFVSETIKALADIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI------ISNESSPGLGT---FVDILNECLFYCDKETDAVPIQFVSDLVELI 749          
The following BLAST results are available for this feature:
BLAST of CX291519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS35_MOUSE1.587e-4241.91Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_HUMAN2.073e-4241.91Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_BOVIN2.073e-4241.91Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_SCHPO2.540e-3239.80Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_YEAST3.105e-3032.56Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_DICDI1.650e-2330.38Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03010B07SK OF2 Citrus clementina cDNA clone C03010B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291519 ID=CX291519; Name=CX291519; organism=Citrus clementina; type=EST; length=746bp
GAGGCTTACTGGAGGACCAAACGTCTGCCATTTACTGTTCCTCCCCTTGT
GTTTTCTTCTCTGAAGTTGGTTCGGCAGCTCCAAGGTCCAGAAGAAAATC
CTTTTGGAGAAGAGGGATCAACTACACCTAAGAAAGTTTTCCAGCTTTTA
AACCAGACTATTGAGACCCTATATGGTGTTCCAGCACCTGAATTGGCATT
GCGGTTGTACTTGCAGTGTGCTGAGGCTGCAAATGACTCTGATCTAGAAC
CTGTGGCTTATGAATTTTTCACTCAAGCATATATCCTGTATGAAGAAGAA
ATTTCAGATTCCAGAGCACAAGTGACAGCAATACATCTAATAATAGGGAC
TCTCCAGAGGATGCACGTATTTGGTGTAGAAAACAGGGATACATTAACAC
ACAAGGCTACAGGGTATTCTGCAAAGCTCTTAAAGAAGCCTGATCAGTGC
AGAGCTGTCTATGCATGCTCACATCTCTTCTGGGTTGATGATCAGGATAA
CATGAAAGATGGAGAGAGGGTCCTGCTCTGTCTCAAGCGTGCACTAAGAA
TAGCAAATGCTGCTCAACAAATGTCTAATGCCACACGAGGTAGCACTGGA
TCAGTCACACTTTTTGTCGAGATACTGAACAAGTACGTTTATTTCTTTGA
GAAGGGTAACACACAGATCAATGCTGCTGCAATCCAGAGCCTGATTGAGC
TGATTACGGCAGAGATGCAAAGCGACTCTTATTCACCGGATCCAGC
back to top