CX291519
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.587e-42 Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1 Query: 19 KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEM 717 +R+ FT+PPLVF++ +L + + E + ++ +K+F +QTI L EL LRL+LQ A AA + + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM F EN + L + ++KLLKKPDQ RAV C+HLFW + + + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N + + LI+ I ++ Sbjct: 523 QRIRFTLPPLVFAAYQLAFRYK--ENSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDL 754
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42 Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1 Query: 19 KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEM 717 +R+ FT+PPLVF++ +L + + E + ++ +K+F +QTI L EL LRL+LQ A AA + + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM F EN + L + ++KLLKKPDQ RAV C+HLFW + + + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N + + LI+ I ++ Sbjct: 523 QRIRFTLPPLVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDL 754
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42 Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1 Query: 19 KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEM 717 +R+ FT+PPLVF++ +L + + E + ++ +K+F +QTI L EL LRL+LQ A AA + + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM F EN + L + ++KLLKKPDQ RAV C+HLFW + + + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N + + LI+ I ++ Sbjct: 523 QRIRFTLPPLVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDL 754
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.540e-32 Identity = 80/201 (39.80%), Postives = 116/201 (57.71%), Query Frame = 1 Query: 136 VFQLLNQTIETLY-GVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELITAEMQS 723 +++ +N I LY + EL L LYL AE A+ + AYEFFTQA+ +YEE + DS Q + +IIG LQ+ F V++ DTL K T Y++KLLKKPDQC +Y SHL+W +D +D +RVL CL+++L+IA+A S+ LF+ IL +Y Y++++ I A I LI+L M+S Sbjct: 534 LWEFVNTCINVLYKNGDSLELCLALYLSAAEMADQENYPDFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLT-------SLKLFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 3.105e-30 Identity = 84/258 (32.56%), Postives = 141/258 (54.65%), Query Frame = 1 Query: 31 FTVPPLVFSSLKLVRQLQ---------GPEENPFGEEGSTTPKKVFQLLNQTIETLYGV---PAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH-VFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-----------KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFF---EKGNTQINAAAIQSLIELITAEMQS 723 +T P ++ + KL+R+ + P+ S K++F+ +++ I ++ +L L+L LQCA A+ L ++Y+FF+QA+ ++EE +SDS+ Q+ A+ I +LQ+ ++ D+L + T + +KLLKK DQCRAVY CSHL+W + N+ +DG+RVL CL+R+LR+A++ + S L VEILN+ +Y+F ++ T I+ I LIELI ++S Sbjct: 582 YTFPAIITNFWKLMRKCRMIQEYLLKKRPDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLILKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKS 832
BLAST of CX291519 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23 Identity = 72/237 (30.38%), Postives = 126/237 (53.16%), Query Frame = 1 Query: 22 RLPFTVPPLVFSSLKLVRQLQGP--------EENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYVYFFEKGNTQINAAAIQSLIELI 705 R+ T+ PLVF SL+ +R + +EN + GS K+F +++TI+ L + +L+ RLYLQ + + L E +A ++++E+I+D +AQV A+ L+I TL + + E ++L + +++LL DQ + + CSHLFWVD+ ++ + VL LK+AL I +SN + G+ FV+ILN+ +++ +K + + L+ELI Sbjct: 526 RIRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGS----KIFTFVSETIKALADIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI------ISNESSPGLGT---FVDILNECLFYCDKETDAVPIQFVSDLVELI 749 The following BLAST results are available for this feature:
BLAST of CX291519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291519 ID=CX291519; Name=CX291519; organism=Citrus clementina; type=EST; length=746bpback to top |