CX291523

Overview
NameCX291523
Unique NameCX291523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCH11_ARATH (Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.874e-80
Identity = 141/209 (67.46%), Postives = 175/209 (83.73%), Query Frame = 3
Query:   75 MADFQTSTHRAKWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDFAR 701
            MADFQTST RAKWIFTPQ+L E+YKA+N+RA+Q LEK GTTQ+EVD  GS +YP+ +  + D ++K  + KPL+ +EE+ MR FYE K++EVCSAF FP+KIQATAL YFKRFYLQWSVM+HHPK IMLTCVYAACKIEENHVSAEE+GKGI+QDH++IL YEM V Q+LEFDLIVY PYR +EGF+N+ME+F Q ++ E+Q L+   +
Sbjct:    1 MADFQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGSGDQADK--KLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKIQATALQYFKRFYLQWSVMQHHPKEIMLTCVYAACKIEENHVSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVYAPYRAIEGFVNNMEEFLQARDDEIQKLESLLK 207          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCH11_ORYSJ (Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYCH1-1 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.628e-78
Identity = 139/207 (67.15%), Postives = 175/207 (84.54%), Query Frame = 3
Query:   75 MADFQTSTHRAKWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVD-VDGSFSYPEPQNNAKDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKD 692
            MADF+TSTHR +WIF   +L++++ A+N+RA +TL +YGTT+++VD VDGS SYPEP   A D+    S  KPL+ EEE+ MRVFYE K++EVCSAF FP+KIQATA++YFKRFYLQWSVMEHHPK+IMLTC+Y++CK+EENHVSAEELGKGI QDHQ+ILN EMIV ++L+FDLIVY PYR +EGF++DMEDFC+  NGE Q L+D
Sbjct:    1 MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEP---APDHVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRSIEGFVDDMEDFCRAGNGEHQRLQD 204          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_XENLA (Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 59/128 (46.09%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  291 LNIEEEQSMRVFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEE----LGK---GISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            L   EE ++  +YE +L + C+AF    P  +  TA +YFKRFYL  SVMEHHP+ IMLTCV+ ACK++E +VS+ +    LG+   G  +  + IL YE+++ Q L F LIV+ PYRP EGF+ D++
Sbjct:   48 LEPHEELAICKYYEKRLLDFCNAFKPTMPKSVLGTACMYFKRFYLNNSVMEHHPRIIMLTCVFLACKVDEFNVSSIQFVGNLGENPLGQEKILEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDVK 175          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_MACFA (Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  282 PKPLNIEEEQSMRVFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            P  L   EE ++  +YE +L E CS F    P  +  TA +YFKRFYL  SVME+HP+ IMLTC + ACK++E +VS+        E   G  +  + IL YE+++ Q L F LIV+ PYRP EGF+ D++
Sbjct:   45 PVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_HUMAN (Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  282 PKPLNIEEEQSMRVFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            P  L   EE ++  +YE +L E CS F    P  +  TA +YFKRFYL  SVME+HP+ IMLTC + ACK++E +VS+        E   G  +  + IL YE+++ Q L F LIV+ PYRP EGF+ D++
Sbjct:   45 PVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_RAT (Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  288 PLNIE--EEQSMRVFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            PL +E  EE ++  +YE +L E CS F    P  +  TA +YFKRFYL  SVME+HP+ IMLTC + ACK++E +VS+        E   G  +  + IL YE+++ Q L F LIV+ PYRP EGF+ D++
Sbjct:   45 PLFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIK 175          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_BOVIN (Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  282 PKPLNIEEEQSMRVFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            P  L   EE ++  +YE +L E CS F    P  +  TA +YFKRFYL  SVME+HP+ IMLTC + ACK++E +VS+        E   G  +  + IL YE+++ Q L F LIV+ PYRP EGF+ D++
Sbjct:   45 PVFLEPHEEITLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKTLEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_MOUSE (Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  282 PKPLNIEEEQSMRVFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            P  L   EE ++  +YE +L E CS F    P  +  TA +YFKRFYL  SVME+HP+ IMLTC + ACK++E +VS+        E   G  +  + IL YE+++ Q L F LIV+ PYRP EGF+ D++
Sbjct:   45 PVFLEPHEELTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQERALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIK 175          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CCNH_DICDI (Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 50/131 (38.17%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  276 SRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKN 668
            S P  L+ ++E S+  +YE K  E+  A   P+K+ A A++Y KRFYL+ S+M++  K +ML+C++ ACK E+NH+  +            I N E+I+ ++L F+LIVY P+RP+ G+I D+ D   + N
Sbjct:   41 SEPNILSPDDELSLIHYYETKTLEIAMALNLPDKVSAPAIIYIKRFYLKNSIMQYGAKLVMLSCLFIACKTEDNHLDIDYYSNITKASPSDITNLEIIILESLNFNLIVYHPFRPMYGYILDINDNSAIYN 171          
BLAST of CX291523 vs. ExPASy Swiss-Prot
Match: CGM2_SCHPO (Cyclin mcs2 OS=Schizosaccharomyces pombe GN=mcs2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 61/189 (32.28%), Postives = 101/189 (53.44%), Query Frame = 3
Query:   84 FQTSTHRAKWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQ-DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 647
            F+ STH   WIFT ++L +     N +    + +    ++ +           QN     +     P  L +EEE  +  +Y  +L  + SA   P  I++TA+L+FKRFYL  SVME+ PK I  T ++ A K  ++++S E+  K + +   + +L YE  V Q+L++DL V+ P+RPL+GF+ D +
Sbjct:    6 FRDSTHYRDWIFTEEDLSKTRAKVNEKFTNIVRERMLEELSL-----------QNK---EASLEVLPPTLTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYSPKIISFTSLFLATKCNDHYISIEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGFLLDCQ 180          
The following BLAST results are available for this feature:
BLAST of CX291523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CCH11_ARATH3.874e-8067.46Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=... [more]
CCH11_ORYSJ1.628e-7867.15Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCNH_XENLA1.496e-2346.09Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1[more]
CCNH_MACFA2.552e-2344.27Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1[more]
CCNH_HUMAN2.552e-2344.27Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1[more]
CCNH_RAT3.334e-2345.04Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2[more]
CCNH_BOVIN4.354e-2344.27Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1[more]
CCNH_MOUSE5.686e-2344.27Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2[more]
CCNH_DICDI1.267e-2238.17Putative cyclin-H OS=Dictyostelium discoideum GN=c... [more]
CGM2_SCHPO5.322e-2132.28Cyclin mcs2 OS=Schizosaccharomyces pombe GN=mcs2 P... [more]

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Properties
Property NameValue
Genbank descriptionC03010C03SK OF2 Citrus clementina cDNA clone C03010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291523 ID=CX291523; Name=CX291523; organism=Citrus clementina; type=EST; length=706bp
TTTGTACTGTATTCTTTCAGCGTGTCCGTGTCTAATCATTGAAGCAACTG
AGCTGAATTTAACGAGTCGAAACGATGGCGGATTTTCAGACCTCGACTCA
CCGAGCCAAGTGGATTTTCACTCCCCAAGAGCTCATTGAGAAGTACAAAG
CTTCTAATCGAAGAGCAATACAAACTCTGGAGAAGTATGGAACAACACAA
ATGGAGGTTGATGTTGATGGGTCATTTTCATACCCAGAACCTCAAAATAA
TGCCAAGGACAACAGTGAAAAGCATTCTCGTCCGAAACCCCTCAATATCG
AAGAGGAACAGTCTATGCGAGTATTTTATGAGAATAAACTTCGCGAAGTA
TGCAGTGCATTTTATTTTCCTAATAAAATTCAGGCAACGGCTCTGTTATA
CTTCAAAAGGTTCTATCTGCAATGGTCGGTCATGGAACATCACCCAAAAA
ATATAATGTTAACTTGTGTATATGCAGCTTGTAAGATAGAGGAAAATCAT
GTTTCAGCAGAGGAGCTTGGCAAGGGAATTTCACAGGATCATCAAATGAT
TCTCAACTATGAAATGATCGTTTATCAGGCTTTGGAATTTGATCTTATCG
TTTATCCACCATATCGTCCGCTCGAAGGATTTATTAATGATATGGAAGAT
TTCTGCCAAGTAAAGAATGGCGAATTGCAGATGCTGAAGGATTTTGCACG
AAACTG
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