CX291526

Overview
NameCX291526
Unique NameCX291526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291526_ssr109 microsatellite CX291526_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
CX291526_ssr169 microsatellite CX291526_ssr169:169..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15280 contig Ccv1_Contig15280:11..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.345e-41
Identity = 85/120 (70.83%), Postives = 95/120 (79.17%), Query Frame = 2
Query:  107 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            LKK+KR                      RKLI+NR KQY+KEY E+++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEP
Sbjct:   15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 134          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.349e-39
Identity = 84/120 (70.00%), Postives = 93/120 (77.50%), Query Frame = 2
Query:  107 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEP
Sbjct:   13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEP 132          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.926e-39
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLI+ R +QYAKEY E+  ELIRLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEP
Sbjct:   41 RKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEP 132          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 137          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 160          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 137          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 138          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 138          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.504e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEP 150          
BLAST of CX291526 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.188e-25
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  191 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 466
            RK+IY R K Y KEY    ++ IR+ R A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEP
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 136          
The following BLAST results are available for this feature:
BLAST of CX291526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL74_ARATH9.345e-4170.8360S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL72_ARATH1.349e-3970.0060S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH3.926e-3986.9660S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_PONAB4.214e-2560.8760S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE4.214e-2560.8760S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA4.214e-2560.8760S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN4.214e-2560.8760S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN4.214e-2560.8760S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT5.504e-2560.8760S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_CHICK7.188e-2559.7860S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]

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Properties
Property NameValue
Genbank descriptionC03010C06SK OF2 Citrus clementina cDNA clone C03010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291526 ID=CX291526; Name=CX291526; organism=Citrus clementina; type=EST; length=467bp
GAAGCCAGAACGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAAGAA
CAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCAGAG
TCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAA
GCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCA
TTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAA
GAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGT
CAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGGATCAATG
CTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAG
ATTTTTAATGGCGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCT
GCACAGAGTTGAGCCCT
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