CX291534

Overview
NameCX291534
Unique NameCX291534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291534 vs. ExPASy Swiss-Prot
Match: FB135_ARATH (F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 58/185 (31.35%), Postives = 82/185 (44.32%), Query Frame = 2 
Query:   56 AWRKVGNAPWSPIAGLFPTYLNGVIHWVCDD---IEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTY--FAPPDIWVMKDYGVQESWIKQLSV----------------------DNGYFGICRPIKYLDDGSLLLFCKRRALVLYNPVEKNTRYLLIH 529
            +WR +G AP+  +       +NG +H+V      + D +      V FD EDE F  IP P       +T   L ++      GCL  C V Y  +   DIWVMK YGV+ESW K+ S+                      +NG   + R +  L++G +LL  K R LV Y+P     + LL H
Sbjct:  223 SWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRK-----FVSFDLEDEEFKEIPKPD-CGGLNRTNHRLVNLK-----GCL--CAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENG--KVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFH 392
The following BLAST results are available for this feature:
BLAST of CX291534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB135_ARATH5.301e-1131.35F-box protein At3g07870 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC03010D02SK OF2 Citrus clementina cDNA clone C03010D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291534 ID=CX291534; Name=CX291534; organism=Citrus clementina; type=EST; length=732bp
GAGGCTTTGTCGATTTCTTAATAGAACAGCTGAGATATACGCCCTTGGTG
GAGCTGCATGGCGGAAAGTTGGAAATGCTCCTTGGTCTCCTATTGCGGGT
CTTTTCCCCACCTATTTAAATGGAGTTATTCATTGGGTTTGTGATGACAT
TGAAGATGATCAGAGTTGTTCTGATTGTATAGTTGGTTTTGACTTTGAGG
ATGAGAGATTCTGTGTGATTCCTGCACCCCCTCACTTTGCCGAGAAACCA
AAGACAAGGGACAATTTATATGATATGAACTTGGGAGTATTAGGGGGTTG
CCTTTCTATATGTGATGTTACTTATTTTGCTCCTCCTGACATCTGGGTGA
TGAAGGATTATGGTGTCCAAGAATCTTGGATTAAACAGCTTTCGGTTGAC
AACGGCTATTTTGGTATCTGTCGGCCCATTAAATACTTGGACGACGGATC
TCTTCTGCTGTTCTGTAAAAGACGGGCTTTGGTTTTATATAATCCTGTGG
AGAAAAATACTAGATATCTTCTGATACATGAGGACCAGTCAATGATATTT
GAAGCAATTACCCATGTGCCAAGCTTTCTTTCACTCAAAGATGTTGGGGG
AGACAATCTAACTGTTCAAAATATCAATTCAAGGTCTGATCAGTTCGAAC
CTGAAGAGTCTGAAACACTTTTCCTCATCGAAATGAGAAAAGCAGGGGAA
TTATTATATTAACTTGGTTTCTGATGAGAGAA
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