CX291537

Overview
NameCX291537
Unique NameCX291537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_ARATH (Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.596e-87
Identity = 149/174 (85.63%), Postives = 165/174 (94.83%), Query Frame = 2
Query:  218 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            EAERTIREGPR+DWS+D+IKS+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLGM+E+ QA+ELKKAGLTAYNHNLDTSRE Y  +I
Sbjct:   35 EAERTIREGPRNDWSRDEIKSVYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVI 208          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_SCHPO (Biotin synthase OS=Schizosaccharomyces pombe GN=bio2 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.192e-58
Identity = 105/164 (64.02%), Postives = 130/164 (79.27%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            R++W++++I+ IYD+P++DL+F  A +HR  H+ ++VQQCTLLSIKTGGC+EDC YC QSSRY+TGVK  KLM  D V++ A+ AK  GSTRFCMG+AWRD  GR   F  ILE +K++R M MEVC TLGML E QA ELK AGLTAYNHNLDTSRE Y+KII
Sbjct:   20 RNNWTREEIQKIYDTPLIDLIFRAASIHRKFHDPKKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVRSMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLDTSREYYSKII 183          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_CYTH3 (Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.767e-54
Identity = 100/164 (60.98%), Postives = 129/164 (78.66%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            R++W+K++I +IY+SP+LDL++ GA VHR  H+ +EVQ CTLLSIKTGGC EDCSYCPQ++RY T VK +KLM    V+ +A +AKE+GSTRFCMGAAWR+    K +F+++++ VK +  MGMEVCCTLGML   QA +LK AGL AYNHNLDTS E Y K+I
Sbjct:    5 RNNWTKEEISAIYNSPILDLMYRGATVHREFHDPQEVQVCTLLSIKTGGCPEDCSYCPQAARYHTDVKVEKLMDVKDVLNSALEAKESGSTRFCMGAAWREVRDNK-DFDKVIDMVKGVSTMGMEVCCTLGMLTPEQADKLKDAGLYAYNHNLDTSAEHYDKVI 167          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_ANASP (Biotin synthase OS=Anabaena sp. (strain PCC 7120) GN=bioB PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.002e-51
Identity = 92/164 (56.10%), Postives = 123/164 (75.00%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            R+DW K +I+++YD+P+L+L++  A VHR  HN +++Q C L+SIKTG C EDCSYC QSSRY T VK Q L+ K  V++ AQ AK+ G +R CMGAAWR+ +   + F+++LE VKD+ DMG+EVCCTLGML   QA +L+ AGL AYNHNLDTS + Y+ II
Sbjct:    7 RYDWHKAEIRAVYDTPLLELIYQAASVHRQFHNPKQIQVCKLISIKTGACPEDCSYCAQSSRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVCMGAAWRE-VRDNSQFDRVLEMVKDVTDMGLEVCCTLGMLTSEQAKKLETAGLYAYNHNLDTSSDYYSTII 169          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_NOSP7 (Biotin synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=bioB PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.145e-51
Identity = 94/166 (56.63%), Postives = 126/166 (75.90%), Query Frame = 2
Query:  242 GPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            G R+DW + +I++IY++P+L+L++  A VHR  H+  ++Q C L+SIKTGGC EDCSYC QSSRY T VK + L+ K+ V+  AQKAKE G +R CMGAAWR+ +   + F ++LE VKDI  MG+EVCCTLGML  +QA +L++AGL AYNHNLDTS+E Y+ II
Sbjct:    3 GIRYDWQELEIRAIYNTPLLELIYQAASVHRQYHDPTKIQVCKLISIKTGGCPEDCSYCAQSSRYKTEVKAEALLEKETVVNIAQKAKETGVSRICMGAAWRE-VRDNSQFEEVLEMVKDITAMGLEVCCTLGMLTANQARKLEEAGLYAYNHNLDTSQEYYSTII 167          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_ANAVT (Biotin synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=bioB PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50
Identity = 92/164 (56.10%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            R+DW   +I+++YD P+L+L++  A VHR  HN +++Q C L+SIKTGGC EDCSYC QSSRY T VK Q L+ K  V++ AQ AK+ G +R CMGAAWR+ +   + F+++LE VKD+ DMG+EVCCTLGML   QA +L+ AGL AYNHNLDTS + Y+ II
Sbjct:    7 RYDWHTAEIRAVYDMPLLELIYQAASVHRQFHNPKQIQVCKLISIKTGGCPEDCSYCAQSSRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVCMGAAWRE-VRDNSQFDRVLEMVKDVTDMGLEVCCTLGMLTTDQAKKLETAGLYAYNHNLDTSSDYYSTII 169          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_YEAST (Biotin synthase, mitochondrial OS=Saccharomyces cerevisiae GN=BIO2 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.661e-50
Identity = 94/166 (56.63%), Postives = 125/166 (75.30%), Query Frame = 2
Query:  245 PRHDWSKDDIKSIYDSPVLDLLFHGAQV-HRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            P H W+K  +K IY +P+L+L  H AQ+ HR  H+  +VQ CTL++IK+GGCSEDC YC QSSR DTG+K +K++  D V++ A++AK  GSTRFC+GAAWRD  GRK+   +I E V  + DMG+E C TLGM+++ QA +LK AGLTAYNHN+DTSRE Y+K+I
Sbjct:   49 PSHSWTKSQLKEIYHTPLLELT-HAAQLQHRKWHDPTKVQLCTLMNIKSGGCSEDCKYCAQSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCLGAAWRDMKGRKSAMKRIQEMVTKVNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDTSREHYSKVI 213          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_MYXXD (Biotin synthase OS=Myxococcus xanthus (strain DK 1622) GN=bioB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.018e-49
Identity = 93/164 (56.71%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDWS  +++++Y+ P+LDL+     VHR      +VQ C+LLSIKTGGC EDCSYCPQ++RY TGVK +KLM    V+ AA KA+ AG+TRFCMGAAWR+ +     F+ +LE V+ +R +GME C TLGML E QA  L++AGL+AYNHNLDTS E Y  II
Sbjct:   30 RHDWSLSEVRALYELPLLDLVHKAQTVHRAVFVDNKVQLCSLLSIKTGGCPEDCSYCPQAARYKTGVKAEKLMAVPDVLDAASKARAAGATRFCMGAAWRE-VKDGPQFDSVLEMVRGVRALGMEACATLGMLSESQAKRLREAGLSAYNHNLDTSPEHYGDII 192          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_FLAJ1 (Biotin synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=bioB PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 92/164 (56.10%), Postives = 118/164 (71.95%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            +H+W+KD+I +IY+ P++DLL+  A +HR  H+   VQ  TLLSIKTGGC EDC YCPQ++RY+TGV+G  LMT   V   A +AK  GS+R CMGAAWR+ +     F+Q+LE V+ I  + MEVCCTLGML E+QA  L +AGL AYNHNLDTS E Y  +I
Sbjct:    6 KHNWTKDEIIAIYNKPLMDLLYEAATIHRQQHDPNVVQVSTLLSIKTGGCPEDCGYCPQAARYNTGVEGNDLMTVSQVKAQALRAKSNGSSRVCMGAAWRN-VKDGEEFDQVLEMVRTINKLDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDTSEEYYKDVI 168          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_GRABC (Biotin synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=bioB PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 87/164 (53.05%), Postives = 121/164 (73.78%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDWS+++++S+ D P  +LLF  A +HR   + REVQ  TLLSIKTGGC EDC+YCPQ+++YDTGV+  +LM  DAV++ A+ AK AG++RFCMGAAWR    ++ + + + E ++ ++ +GME C TLGML + QA+ LK+AGL  YNHNLDTS E Y  +I
Sbjct:    4 RHDWSREEVRSLLDLPFPELLFRAAAIHRACFDPREVQISTLLSIKTGGCPEDCAYCPQAAQYDTGVEASRLMRVDAVLEEARAAKAAGASRFCMGAAWRSP--KERDMDTVCEMIEGVKALGMESCVTLGMLTDQQALRLKQAGLDYYNHNLDTSPEYYGAVI 165          
The following BLAST results are available for this feature:
BLAST of CX291537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIOB_ARATH1.596e-8785.63Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE... [more]
BIOB_SCHPO1.192e-5864.02Biotin synthase OS=Schizosaccharomyces pombe GN=bi... [more]
BIOB_CYTH36.767e-5460.98Biotin synthase OS=Cytophaga hutchinsonii (strain ... [more]
BIOB_ANASP7.002e-5156.10Biotin synthase OS=Anabaena sp. (strain PCC 7120) ... [more]
BIOB_NOSP79.145e-5156.63Biotin synthase OS=Nostoc punctiforme (strain ATCC... [more]
BIOB_ANAVT2.037e-5056.10Biotin synthase OS=Anabaena variabilis (strain ATC... [more]
BIOB_YEAST2.661e-5056.63Biotin synthase, mitochondrial OS=Saccharomyces ce... [more]
BIOB_MYXXD5.018e-4956.71Biotin synthase OS=Myxococcus xanthus (strain DK 1... [more]
BIOB_FLAJ12.491e-4856.10Biotin synthase OS=Flavobacterium johnsoniae (stra... [more]
BIOB_GRABC1.614e-4753.05Biotin synthase OS=Granulibacter bethesdensis (str... [more]

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Properties
Property NameValue
Genbank descriptionC03010D05SK OF2 Citrus clementina cDNA clone C03010D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291537 ID=CX291537; Name=CX291537; organism=Citrus clementina; type=EST; length=740bp
AACTTTTCGTATCAGATTCTTCTTTCTTCTCTCTCAATTGACACTCCTAG
TTTTCATCGCCAAAAATCAAGTGCAGCTCGAGCAACGGAAAAAAATCAAA
ATGATGTCGTTTCGGTCGTTACTGCGTTCGCAACGTAGTTTAAGTTTAAG
ACCCTCAAAGAAATTTTTGGCATTGCATTCTTCTTGCTCGTGTTACTCAG
CCTCGGCTGCTGCCATTGAAGCTGAAAGAACAATACGTGAAGGTCCCAGA
CACGATTGGTCTAAAGATGACATCAAATCTATCTACGACTCTCCTGTTCT
CGATCTCCTCTTCCATGGAGCTCAAGTTCACAGACATGCTCATAACTTCA
GGGAAGTGCAGCAGTGCACTCTCCTCTCCATCAAGACAGGTGGATGCAGT
GAGGATTGTTCATATTGTCCTCAATCCTCTAGATATGACACTGGAGTGAA
GGGCCAAAAGCTTATGACTAAAGACGCCGTGATGCAGGCAGCACAAAAGG
CAAAGGAGGCCGGAAGTACACGATTTTGTATGGGTGCTGCATGGAGAGAC
ACAATCGGGAGGAAAACCAATTTCAACCAAATACTTGAATACGTGAAAGA
TATAAGGGACATGGGAATGGAGGTTTGCTGCACCTTGGGCATGCTGGAAG
AGCATCAGGCTATAGAACTCAAGAAAGCAGGCCTTACAGCATACAACCAT
AACCTTGATACCTCAAGAGAAATTTACGCGAAAATCATTA
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