CX291540

Overview
NameCX291540
Unique NameCX291540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11292 contig Ccv1_Contig11292:1339..2072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291540 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 2
Query:    2 PQQILESHHLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 256
            P  ILESH L+++TLEYRRECGRDSVLQSLT VSD +  N VN+G   CQHLLRL++GAE++R RT WRPK A +  N+  I A+
Sbjct:  327 PLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNVGEFNCQHLLRLDDGAEIVRGRTRWRPKHAKSSANMDQITAK 411          
BLAST of CX291540 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 PQQILESHHLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 256
            P  I ESHH++S TLEYRREC RDSVL+SLT VS    G     G V C HLL+LE G+EVLRARTEWRPK   +F  +  IPAE
Sbjct:  300 PDSIFESHHISSFTLEYRRECTRDSVLRSLTTVS----GGSSEAGLV-CDHLLQLEGGSEVLRARTEWRPKLTDSFRGISVIPAE 379          
BLAST of CX291540 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    2 PQQILESHHLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAEST 262
            P  I ESHH++S T+EYRREC  DSVLQSLT VS    G     G V C+HLL+LE G+EVLRA+TEWRPK   +F  +  IPAES+
Sbjct:  300 PDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS----GGSSEAGLV-CEHLLQLEGGSEVLRAKTEWRPKLTDSFRGISVIPAESS 381          
BLAST of CX291540 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 2
Query:    2 PQQILESHHLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKD 217
            P ++LE+  L S+TLEYRRECGR+SVL+SLTA+     G     GS + QHLLRLE+G E+++ RTEWRPK+
Sbjct:  331 PPEVLETQELCSLTLEYRRECGRESVLESLTAMDPSGGG----YGS-QFQHLLRLEDGGEIVKGRTEWRPKN 397          
The following BLAST results are available for this feature:
BLAST of CX291540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FATB_GOSHI2.470e-2462.35Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA1.832e-1961.18Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
FATB_CINCA1.832e-1958.62Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO4.669e-1556.94Myristoyl-acyl carrier protein thioesterase, chlor... [more]
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Properties
Property NameValue
Genbank descriptionC03010D08SK OF2 Citrus clementina cDNA clone C03010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291540 ID=CX291540; Name=CX291540; organism=Citrus clementina; type=EST; length=734bp
TCCTCAGCAGATCTTGGAGAGTCATCATCTGGCATCTGTGACCCTGGAGT
ATAGGAGGGAGTGCGGAAGGGACAGTGTGTTGCAGTCCCTGACTGCTGTC
TCAGACAAGGACATTGGCAATTTGGTGAACTTGGGCAGTGTGGAGTGCCA
GCACTTGCTCCGACTAGAGGAAGGTGCTGAAGTTTTGAGAGCAAGGACTG
AATGGAGGCCAAAGGATGCCCACAACTTTGGGAATGTTGGTCCAATCCCT
GCAGAAAGCACTTAAAACCCAAGTTTCTCGGAGATGCGGTGGTCGCGCTG
CCGTGTGTCACATTGCTCGTGTAGAATGCTGTGTGCTCTTGGATCTATAT
ATGTTCGCTTATATATTTAAAAATATATATCTATATACACATATCTTATT
CATCTTCTTTCTTTAAAAAAAAAAAAAAGGTTGTAAGTTTCATTGTAATT
AGCGTTTGCTGCGCTGTGTTTCTCGCTCCCTGCATTGCCGAATCAATTAG
CTAGCTGCTGAGGATGACTGAGTTTGTATAGAGGGACAAGATTCACTTAT
GCTTTGCCTAACATTTTCGGTTGGTGGTGGTACCCTCATGTTACCTTGAC
CTTTAGATGGACAGGACGTGTATATTTTTTGGTTTGGTTTTAGGGTTCTA
GTTAGAATCGAGGAGAGTTAGGCAACCGAATTTGTGTTTCGACTTTGCCA
ATATAATTATTTTTTCATCAGCCAGCTTGTATGC
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