CX291542

Overview
NameCX291542
Unique NameCX291542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14534 contig Ccv1_Contig14534:209..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291542 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 90/257 (35.02%), Postives = 124/257 (48.25%), Query Frame = 3
Query:    3 SPLLMQMAQPQSRGQILTETSGGQVPRLPTSVGHPILSNGAAGAMLARNGIGENSRGTGYNSVSQTSSVLNFPLNHSAELPGNSFPLGSTPGISAGMSTLTTKGGFQEEINS-DIKG-----SGGF-MPSYDIFNDLQQHKPHN---------WELQNVGFAFDASQHSNSLQASVDVTPSVLVNQGYSSS--PRNVQNSNVSAMGKPIFSVGEGSEHGNALNVGQ----HLNSLLVD-KLTRVKSERVTDT-SCQP 701
            S +++ +A    RG      S GQ P L +SV      +   GA+  RN I E    T    +  T SV N   N  A+LP +SFPL S PGIS  +S       +QEE+NS D KG     + GF  PSYDIFND  QH+ HN         W+L+N+G  F ++Q +    A+   T +   ++ YSSS   R  + ++ + +G          EHG  L        HLN + +D    RVKSERV +T +C P
Sbjct:  394 SGMMLPVADQLPRGGPSMLPSLGQQPILSSSVSR---RSDLTGALAVRNSIPE----TNSRVLPTTHSVFN---NFPADLPRSSFPLASAPGISVPVSV-----SYQEEVNSSDAKGGSSAATAGFGNPSYDIFNDFPQHQQHNKNISNKLNDWDLRNMGLVFSSNQDA----ATATATAAFSTSEAYSSSSTQRKRRETDATVVG----------EHGQNLQSPSRNLYHLNHVFMDGGSVRVKSERVAETVTCPP 621          
BLAST of CX291542 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 82/243 (33.74%), Postives = 118/243 (48.56%), Query Frame = 3
Query:    6 PLLMQMAQPQSRGQILTETSGGQVPRLPTSVGHPILSNGAA--GAMLARNGIGENSR--GTGYNSVSQTSSVLNFPLNH-SAELPGNSFPLGSTPGISAGMSTLTTKGGFQEEINSDIKGSGGFMPSYDIFNDLQQHKPHNWELQNVGFAFDASQHSNSLQASVDVTPSVLVNQGYSSSPRNVQNSNVSAMGKPIFSVGEGSEHGN-----ALNVGQHLNSLLVD---KLTRVKSERV-TDTS 692
            PL  Q + P+    +LT +         +S+  P+LSN  +       RN I E+SR   T Y +++   S  + P N+   ELP NSFPL S PGIS  +   T+   +QEE+NS    +G   PSYD+F   Q    ++W+L+N+G AFD+ Q S S   S         ++ YSSS  +  N+ V+A           +EHG         + QH + +  D      RVKSERV TDT+
Sbjct:  442 PLAGQQSLPRGPPPMLTSSQ--------SSIRQPMLSNRISERSGFSGRNNIPESSRVLPTSYTNLTTQHSSSSMPYNNFQPELPVNSFPLASAPGISVPVRKATS---YQEEVNS--SEAGFTTPSYDMFTTRQ----NDWDLRNIGIAFDSHQDSESAAFS--------ASEAYSSSSMSRHNTTVAA-----------TEHGRNHQQPPSGMVQH-HQVYADGNGGSVRVKSERVATDTA 647          
The following BLAST results are available for this feature:
BLAST of CX291542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARR2_ARATH2.064e-2035.02Two-component response regulator ARR2 OS=Arabidops... [more]
ARR1_ARATH1.384e-1633.74Two-component response regulator ARR1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC03010D10SK OF2 Citrus clementina cDNA clone C03010D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291542 ID=CX291542; Name=CX291542; organism=Citrus clementina; type=EST; length=718bp
GTAGCCCTTTACTCATGCAAATGGCTCAACCGCAATCACGAGGGCAGATA
CTAACTGAAACTAGTGGAGGTCAAGTTCCCAGGCTTCCAACATCTGTTGG
GCATCCTATACTATCAAATGGGGCTGCTGGTGCAATGTTAGCAAGAAATG
GGATTGGTGAAAATAGTAGAGGGACAGGGTACAATTCAGTTTCTCAAACA
TCTTCAGTGTTAAATTTCCCCTTAAACCACTCGGCAGAATTGCCAGGCAA
TAGTTTCCCCCTAGGAAGTACACCGGGAATATCCGCAGGGATGTCCACTC
TCACAACTAAAGGTGGATTTCAGGAAGAAATCAACTCAGACATTAAAGGA
TCTGGAGGATTTATGCCAAGTTATGATATTTTTAATGATTTGCAACAGCA
CAAACCCCACAACTGGGAGCTGCAGAATGTGGGCTTCGCCTTTGATGCTT
CTCAGCATTCAAACTCTCTGCAAGCCAGTGTTGATGTAACACCTTCAGTT
TTAGTTAATCAAGGATATTCTTCTAGCCCAAGGAATGTACAGAATAGTAA
TGTATCAGCGATGGGCAAGCCAATTTTCTCGGTTGGGGAAGGGAGCGAGC
ATGGGAATGCTCTGAATGTTGGTCAGCATCTCAATAGCCTTCTTGTTGAT
AAACTCACGAGAGTGAAATCTGAGAGAGTTACAGATACTAGCTGTCAGCC
TACACTCCCTCCTCAACA
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