CX291543

Overview
NameCX291543
Unique NameCX291543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291543 vs. ExPASy Swiss-Prot
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 64/157 (40.76%), Postives = 106/157 (67.52%), Query Frame = 1 
Query:  229 KHVASKIENLVEYSYIPESAQINESQFPIMSPYNLY-KQKTSLTRSIRTLISTKRPLPKEYIQSSRLDQCALQASQSE*YVTLEIPSDLVANWKREGYTHLHLGGIRLILTLHGRKGLPVTARIALLDTRFKQYQHAVIGTVLTTLHAGSVLLTFYP 696
            K +++K + L E   + E+ +I+++  P+++PY+ + K+  +    IR+L+ +K    KEY+ +S+LDQ  + A+  E +VTL IP +  ++WK   +TH+H G +++ LT HGRKG PV AR+ALLDTR+ +YQHA +GT   TL+AG+V +T +P
Sbjct:   26 KALSNKYDYLYEVDILKENQKISDTYLPLLNPYSAFAKRSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTVFITLFP 182
[Close]
BLAST of CX291543 vs. ExPASy Swiss-Prot
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 64/157 (40.76%), Postives = 106/157 (67.52%), Query Frame = 1 
Query:  229 KHVASKIENLVEYSYIPESAQINESQFPIMSPYNLY-KQKTSLTRSIRTLISTKRPLPKEYIQSSRLDQCALQASQSE*YVTLEIPSDLVANWKREGYTHLHLGGIRLILTLHGRKGLPVTARIALLDTRFKQYQHAVIGTVLTTLHAGSVLLTFYP 696
            K +++K + L E   + E+ +I+++  P+++PY+ + K+  +    IR+L+ +K    KEY+ +S+LDQ  + A+  E +VTL IP +  ++WK   +TH+H G +++ LT HGRKG PV AR+ALLDTR+ +YQHA +GT   TL+AG+V +T +P
Sbjct:   25 KALSNKYDYLYEVDILKENQKISDTYLPLLNPYSAFAKRSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTVFITLFP 181
The following BLAST results are available for this feature:
BLAST of CX291543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POLG_PVCV28.897e-3240.76Genome polyprotein OS=Petunia vein clearing virus ... [more]
POLG_PVCV18.897e-3240.76Genome polyprotein OS=Petunia vein clearing virus ... [more]
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Properties
Property NameValue
Genbank descriptionC03010D11SK OF2 Citrus clementina cDNA clone C03010D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291543 ID=CX291543; Name=CX291543; organism=Citrus clementina; type=EST; length=709bp
GATTCGGCCGAGGATCTCGTGTACAACGCCACGTACAACTACCCACTGGT
ATCTGAGCCACACTTCATGTAGAGGTGGTATCCTTAGTAATTCCAAATAA
TCTTATTTGATCTCCTAGAAGAAGATTACCTAAACATGGAAACAACTTCA
TCTTCAACCTCAACACCTTCATCGTCTTCATCCCATATTTCTCTTTCCTC
CAATCTCTCTCTTCCAAGATCATGTCAAAAACATGTAGCCTCTAAAATTG
AAAACCTTGTTGAATATTCTTATATTCCCGAATCTGCCCAAATCAATGAA
TCACAGTTTCCTATCATGAGTCCCTACAACCTCTACAAACAAAAAACTTC
TCTCACCAGAAGTATTAGAACCCTCATCTCCACAAAAAGACCACTACCAA
AAGAGTATATCCAATCTTCTAGACTCGATCAGTGTGCTTTACAAGCCTCT
CAAAGTGAATAGTATGTCACTTTAGAAATACCCTCAGATCTTGTAGCAAA
CTGGAAACGAGAAGGGTATACCCATCTTCATCTTGGTGGTATTAGATTGA
TTCTGACTCTCCATGGCCGAAAAGGCTTACCTGTTACAGCCAGAATTGCT
CTCCTAGACACCAGGTTCAAACAGTACCAACATGCTGTTATAGGAACCGT
TCTGACCACACTCCATGCTGGTAGTGTCCTCTTAACCTTTTATCCAATTT
CAACCTCTT
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