CX291573

Overview
NameCX291573
Unique NameCX291573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig370 contig Ccv1_Contig370:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.017e-83
Identity = 139/191 (72.77%), Postives = 156/191 (81.68%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNSSSTGSRD*AVCCXXXXXXRYQC 586
            KYKGNIPHCCKKDPTVVDLLPGTPYNQQI NCCKGGV++SW QDP TA SSFQ+SVGAAGTTNKTVRVP+NFTL  PGPGYTCGPAK+ +PTKF+T+D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSF NET V CPTCACGCQNN TESG+C+    P + +  S  ++   V        R+ C
Sbjct:  108 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMC 298          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.875e-76
Identity = 128/166 (77.11%), Postives = 148/166 (89.16%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEI 511
            K+KG IPHCCKK P+VVDLLPG+PYNQQI NCC+GGV++SWAQDP TA+S+FQL+VG AGTTNKTVRVPKNFTLKAPGPGYTC PAK+ KPT+FI +DKRRVTQA+MTWNVTCTYSQFLAQKTPTCCVSLSSF N+T VSCPTC+CGC+N  ++ G+C+    P I
Sbjct:  105 KFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPATAVSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNT-SQPGNCVDPKGPRI 269          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.618e-75
Identity = 124/169 (73.37%), Postives = 143/169 (84.62%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNS 520
            K+KG  PHCCKKDPTVVDLLPGTPYN QI NCCK GVI+++ QDP+ A SSFQ+SVG AGTTNKTV++PKNFTLKAPGPGYTCG A + +PTKF T D RR TQA+MTWNVTCTYSQFLAQKTP+CCVSLSSF N+T V+CPTC+CGCQNNGT  GSC+    P + ++
Sbjct:  108 KFKGGTPHCCKKDPTVVDLLPGTPYNMQIANCCKAGVINTFNQDPSNAASSFQISVGLAGTTNKTVKLPKNFTLKAPGPGYTCGRAMIVRPTKFFTGDGRRATQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSA 276          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 3.909e-74
Identity = 119/159 (74.84%), Postives = 145/159 (91.19%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCI 490
            K+KGNIPHCCKK P +VDLLPGTPYNQQI NCC+GGVIS+WAQDP TA+SSFQ+SVG +GTTN TVR P+N TLKAPGPGYTCGPAK+ KP++FI++DKRR TQ+++TWN+TCTYSQFLA+KTPTCCVSLS+F NET V CPTC+CGCQN+ +++G+C+
Sbjct:  100 KFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATAISSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQSLLTWNITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQNS-SQAGTCV 257          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.105e-74
Identity = 123/176 (69.89%), Postives = 148/176 (84.09%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNSSSTGSRD 541
            K+K NIPHCCKKDP +VDLLPGTPYN QI NCCKGGV++SWAQDP  A++SFQ+SVG AGTTNKTVRVP+NFTLK+PGPGYTCG AKV +PTKF + D RR TQA MTWNVTCTYSQ +AQ++PTCCVSLSSF N+T V+CPTC+CGCQNN  + GSC++   P + +  +T ++D
Sbjct:  100 KFKSNIPHCCKKDPEIVDLLPGTPYNMQIANCCKGGVLNSWAQDPANAIASFQVSVGQAGTTNKTVRVPRNFTLKSPGPGYTCGSAKVVRPTKFFSQDGRRTTQAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNN--KPGSCVEGNSPYLASVVNTHNKD 273          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.186e-68
Identity = 113/160 (70.62%), Postives = 131/160 (81.88%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIK 493
            K+KGN+PHCCKK PTVVDLLPG PYNQQ  NCCKGGVI +W QDP+ A+S FQ+S G AGTTNKTV++PKNFTL  PGPGYTCGPAK+   T F+T+DKRR TQA+MTWNVTCTYSQFLA+K P+CCVS SSF N+T   CP+CACGC+N      SC+K
Sbjct:   92 KFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAVSQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCEN----KKSCVK 247          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.489e-65
Identity = 116/184 (63.04%), Postives = 140/184 (76.09%), Query Frame = 2
Query:   17 YKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPA-KVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALP---EINNSSSTGSRD*AVCC 556
            +K NIPHCCK+DP VVDL+PG PYN Q  NCCKGGV++SW QDP  A++SFQ++VG +GT+NKTV+ PKNFTLKAPGPGY+CG A +V  PT+FI+ D RR TQA +TWNVTCTYSQF+AQ+ PTCCVSLSSF NET V+CP CACGCQN   + GSC++   P    + N    GS    V C
Sbjct:  102 FKANIPHCCKRDPRVVDLVPGAPYNMQFGNCCKGGVLTSWVQDPLNAVASFQITVGHSGTSNKTVKAPKNFTLKAPGPGYSCGLAQEVKPPTRFISLDGRRTTQAHVTWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQNK--KPGSCVEGNSPYLASVVNGPGKGSLTPLVQC 283          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.455e-61
Identity = 100/168 (59.52%), Postives = 130/168 (77.38%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINN 517
            K   N+PH CKK PTVVDLLPG P + QI NCCK G +S+++QDP  + +SFQ+ VG +G +N+TVRVPKNF+L APGPGYTC  A + KP++F++ D RR TQ +MTWNV CTYSQFLAQK P+CCVSLSSF+N+ TV CPTC+CGC+N  + +G C+K   P++ +
Sbjct:  101 KEGSNVPHSCKKHPTVVDLLPGAPIDLQIANCCKAGSLSAFSQDPANSAASFQIIVGHSGNSNETVRVPKNFSLMAPGPGYTCSRAMIVKPSRFLSPDGRRATQVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQS 268          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.913e-59
Identity = 111/199 (55.78%), Postives = 132/199 (66.33%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTE-SGSCIKNALP----EINNSSSTGSRD*AVCCXXXXXXRYQCAGV 595
            K+KG IPH CK+ P +VDLLPG PYNQQI NCCK GV+S++ QDP  ++S+FQ+SVG AGTTNKTV++P NFTL  PGPGYTCGPA +   T ++T D+RR TQA+MTW VTCTYSQ LA + PTCCVS SSF N T V C  CACGC ++G   +G   KNA         NS   G       C      R   AGV
Sbjct:   94 KFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSVSAFQVSVGLAGTTNKTVKLPTNFTLAGPGPGYTCGPATIVPSTVYLTPDRRRRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGV 292          
BLAST of CX291573 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.913e-59
Identity = 111/199 (55.78%), Postives = 132/199 (66.33%), Query Frame = 2
Query:   14 KYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTE-SGSCIKNALP----EINNSSSTGSRD*AVCCXXXXXXRYQCAGV 595
            K+KG IPH CK+ P +VDLLPG PYNQQI NCCK GV+S++ QDP  ++S+FQ+SVG AGTTNKTV++P NFTL  PGPGYTCGPA +   T ++T D+RR TQA+MTW VTCTYSQ LA + PTCCVS SSF N T V C  CACGC ++G   +G   KNA         NS   G       C      R   AGV
Sbjct:   94 KFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSVSAFQVSVGLAGTTNKTVKLPTNFTLAGPGPGYTCGPATIVPSTVYLTPDRRRRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGV 292          
The following BLAST results are available for this feature:
BLAST of CX291573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
COBRA_ARATH6.017e-8372.77Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL1_ARATH1.875e-7677.11COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL3_ORYSJ4.618e-7573.37COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL2_ARATH3.909e-7474.84COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL1_ORYSJ5.105e-7469.89COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH4.186e-6870.63COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ORYSJ1.489e-6563.04COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL4_ORYSJ8.455e-6159.52COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ7.913e-5955.78COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSI7.913e-5955.78COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03010G08SK OF2 Citrus clementina cDNA clone C03010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291573 ID=CX291573; Name=CX291573; organism=Citrus clementina; type=EST; length=684bp
AAGGAGATTGTTCAAATATAAAGGGAACATCCCACATTGCTGCAAGAAGG
ATCCAACAGTTGTAGATTTGTTGCCGGGGACTCCATATAACCAGCAGATT
GAAAATTGTTGCAAAGGGGGAGTAATAAGCTCCTGGGCACAGGACCCAAC
TACTGCATTAAGCTCATTCCAGCTCAGTGTTGGTGCTGCAGGAACAACTA
ACAAAACTGTCAGAGTACCCAAAAATTTCACACTTAAAGCCCCAGGGCCT
GGATATACTTGTGGACCTGCAAAAGTTGGTAAACCAACTAAATTCATTAC
GTCAGATAAGAGGAGAGTCACACAAGCTATGATGACCTGGAATGTCACAT
GCACATATTCACAGTTCTTGGCTCAAAAGACACCCACCTGTTGTGTTTCT
CTCTCTTCCTTCAACAATGAAACAACAGTAAGCTGCCCAACGTGTGCTTG
TGGCTGTCAAAACAATGGAACAGAATCTGGGAGTTGCATAAAAAATGCAT
TGCCTGAAATCAACAACAGCAGCAGCACGGGGAGCCGGGATTGAGCCGTA
TGCTGCAGTAGCAGTAGCAGTAGCAGGTATCAATGTGCTGGTGTCATACA
ATGAATTAGACGGAACCCCTCTTAATATCTCATCTTTCTCCACTGCAAGA
CCCTGTTATTGCCTTAGAACCAATGTCCAAAGTG
back to top