CX291585
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_RAT (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14 Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420 Q +TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + YYSS + + +C Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLYELEEEYYSSSSSLCEANDLPLC 150
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_MOUSE (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus GN=Med22 PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14 Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420 Q +TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + YYSS + + +C Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLYELEEEYYSSSSSLCEANDLPLC 150
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_HUMAN (Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens GN=MED22 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14 Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420 Q +TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + YYSS + + +C Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLYELEEEYYSSSSSLCEANDLPLC 150
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_CHICK (Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus GN=MED22 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14 Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420 Q +TL+Q R++ D+ SI+DNF++++ A++ D ++ Q+++ M +RA+ +V+A +SL+KLVS+LKQ I + F S+N+ + QR + E+ D+ L + YYSS + ++ +C Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDEISIDLYELEEEYYSSSYSLCDSNDLPLC 150
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_BOVIN (Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420 Q +TL+Q R++ D+ SI+DNF++++ A++ D + Q+++ M +RA+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + YYSS + + +C Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVSIDLYELEEEYYSSSSSLCEANDLPLC 150
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_XENLA (Mediator of RNA polymerase II transcription subunit 22 OS=Xenopus laevis GN=med22 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13 Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420 Q +TL+Q R++ DI SI+DNF++++ A++ + + Q+++ M +R++ +V+A +SL+KLVS+LKQ I + F S+N+ + QR + E+ D+ L + YYSS + S +C Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEEEHQVSRSTQGEQDNYEMHVRSANIVRAGESLMKLVSDLKQFLILNDFPSVNESINQRNQQLRTLREECDKKLIALRDDIAIDLYELEEEYYSSSYSVCDPSDLPLC 150
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_TAKRU (Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu rubripes GN=med22 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13 Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGH 387 Q +TL+Q R++ DI SI++NF++++ A++ D P + Q+ + M +RA+ +V+A +SL+KLVS+LKQ I + F S+ND + + + E+ D+ L + YYSS + Sbjct: 9 QSKETLLQSYNKRLKDDIKSILENFTEIIKTAKIEDETQVSRPAQAEQDHYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEECDKKLISLRDEIAIDLYELEEEYYSSSY 139
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_DANRE (Mediator of RNA polymerase II transcription subunit 22 OS=Danio rerio GN=med22 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12 Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 1 Query: 22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSS 381 Q +TL+Q R++ DI SI+DNF++++ A+V D + Q+ F M +RA+ +V+A +SL+KLVS+LKQ I + F S+N+ + R + E+ D+ L + YYSS Sbjct: 9 QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLYELEEEYYSS 137
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_DICDI (Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum GN=med22 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 31/116 (26.72%), Postives = 69/116 (59.48%), Query Frame = 1 Query: 43 QRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHR 390 +++++ I +++N+ ++ +++VNDP ++N+ E + ME R S M+ A + LLK++ ELKQ I + F+++ + V + F+++ E+T++ + I YY+S ++ Sbjct: 27 KQIDSKIMQLLENYHNIIKISKVNDP-LKNASEIYEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKLISEELSRSLKELEDEYYNSSYK 141 The following BLAST results are available for this feature:
BLAST of CX291585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291585 ID=CX291585; Name=CX291585; organism=Citrus clementina; type=EST; length=709bpback to top |