CX291585

Overview
NameCX291585
Unique NameCX291585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11640 contig Ccv1_Contig11640:170..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_RAT (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420
            Q  +TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +              YYSS     + +   +C
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLYELEEEYYSSSSSLCEANDLPLC 150          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_MOUSE (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus GN=Med22 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420
            Q  +TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +              YYSS     + +   +C
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLYELEEEYYSSSSSLCEANDLPLC 150          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_HUMAN (Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens GN=MED22 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420
            Q  +TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +              YYSS     + +   +C
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLYELEEEYYSSSSSLCEANDLPLC 150          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_CHICK (Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus GN=MED22 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420
            Q  +TL+Q    R++ D+ SI+DNF++++  A++ D        ++ Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ + QR  +     E+ D+ L  +              YYSS +    ++   +C
Sbjct:    9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDEISIDLYELEEEYYSSSYSLCDSNDLPLC 150          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_BOVIN (Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420
            Q  +TL+Q    R++ D+ SI+DNF++++  A++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +              YYSS     + +   +C
Sbjct:    9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVSIDLYELEEEYYSSSSSLCEANDLPLC 150          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_XENLA (Mediator of RNA polymerase II transcription subunit 22 OS=Xenopus laevis GN=med22 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHRTTQNSQQ*VC 420
            Q  +TL+Q    R++ DI SI+DNF++++  A++ +        +  Q+++ M +R++ +V+A +SL+KLVS+LKQ  I + F S+N+ + QR  +     E+ D+ L  +              YYSS +     S   +C
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEEEHQVSRSTQGEQDNYEMHVRSANIVRAGESLMKLVSDLKQFLILNDFPSVNESINQRNQQLRTLREECDKKLIALRDDIAIDLYELEEEYYSSSYSVCDPSDLPLC 150          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_TAKRU (Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu rubripes GN=med22 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGH 387
            Q  +TL+Q    R++ DI SI++NF++++  A++ D      P +  Q+ + M +RA+ +V+A +SL+KLVS+LKQ  I + F S+ND +  +  +     E+ D+ L  +              YYSS +
Sbjct:    9 QSKETLLQSYNKRLKDDIKSILENFTEIIKTAKIEDETQVSRPAQAEQDHYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEECDKKLISLRDEIAIDLYELEEEYYSSSY 139          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_DANRE (Mediator of RNA polymerase II transcription subunit 22 OS=Danio rerio GN=med22 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   22 QKLKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSS 381
            Q  +TL+Q    R++ DI SI+DNF++++  A+V D        +  Q+ F M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ +  R  +     E+ D+ L  +              YYSS
Sbjct:    9 QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLYELEEEYYSS 137          
BLAST of CX291585 vs. ExPASy Swiss-Prot
Match: MED22_DICDI (Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum GN=med22 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 31/116 (26.72%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   43 QRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYYSSGHR 390
            +++++ I  +++N+  ++ +++VNDP ++N+ E + ME R S M+ A + LLK++ ELKQ  I + F+++ + V  +   F+++ E+T++ +  I              YY+S ++
Sbjct:   27 KQIDSKIMQLLENYHNIIKISKVNDP-LKNASEIYEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKLISEELSRSLKELEDEYYNSSYK 141          
The following BLAST results are available for this feature:
BLAST of CX291585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MED22_RAT4.905e-1430.99Mediator of RNA polymerase II transcription subuni... [more]
MED22_MOUSE4.905e-1430.99Mediator of RNA polymerase II transcription subuni... [more]
MED22_HUMAN4.905e-1430.99Mediator of RNA polymerase II transcription subuni... [more]
MED22_CHICK4.905e-1429.58Mediator of RNA polymerase II transcription subuni... [more]
MED22_BOVIN6.406e-1430.28Mediator of RNA polymerase II transcription subuni... [more]
MED22_XENLA2.434e-1329.58Mediator of RNA polymerase II transcription subuni... [more]
MED22_TAKRU7.082e-1331.30Mediator of RNA polymerase II transcription subuni... [more]
MED22_DANRE1.578e-1233.33Mediator of RNA polymerase II transcription subuni... [more]
MED22_DICDI7.830e-1226.72Putative mediator of RNA polymerase II transcripti... [more]
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Properties
Property NameValue
Genbank descriptionC03011A02SK OF2 Citrus clementina cDNA clone C03011A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291585 ID=CX291585; Name=CX291585; organism=Citrus clementina; type=EST; length=709bp
GCCGCAGCAGCTGCAGCAGCTCAGAAGCTCAAGACTCTGATGCAAAGAGT
CGAAACTGATATCGCAAGTATTGTCGACAATTTCAGCCAGCTAGTCAATG
TTGCAAGGGTGAATGATCCACCCGTCAGAAACTCACAAGAATCTTTCATG
ATGGAGATGCGGGCATCCAGAATGGTCCAGGCAGCTGACTCTTTACTTAA
GTTGGTCTCAGAGTTAAAGCAGACTGCTATTTTCTCAGGATTTGCGTCTC
TTAATGACCATGTAGAACAAAGGACTAATGAGTTTAACCAGCAGGCAGAA
AAAACAGACCGAATGTTGGCTAGAATTGGAGAGGAGGCAGCTGCTAGTCT
TAAGGAGCTTGAAGCTCATTATTATTCTTCTGGGCATAGGACAACTCAAA
ATTCTCAACAATGAGTTTGTGTCAATCTAAGGACCTAGAAAGAAATAGAT
ACTTGAACAATTTTTTGTGCTCTTTTTGTTTAGACATGACCAAATGATGT
GTAATATGGAAAAAAGGAAATTCAGTGCCACTTTTCAAATGGAGTAGAAT
AGGGATTAATGGTACAATATTGTTTTCAAAGAGCCATATTGACATATTGG
ACGTGCAAGCAAGAGCTAGAGCAAGAGCACTTTTGTTTCACAAAATTGTA
AGAAGTTCCAACTGTTGTGTAGCATAAATACTTTGGACAAATGACTGGTA
TTTGTCCAA
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