CX291588

Overview
NameCX291588
Unique NameCX291588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig371 contig Ccv1_Contig371:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYR5_TOBAC (Uridine 5'-monophosphate synthase (Fragment) OS=Nicotiana tabacum GN=PYR5-6 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.276e-98
Identity = 179/227 (78.85%), Postives = 194/227 (85.46%), Query Frame = 1
Query:    1 LKYEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            L Y+ERA + KN TG+KLF++MV+KE+NLCL+ADVATAAELL IA+KVGPEIC+LKTHVDILPDFTPDFGSKLR+IA+KHNFLIFEDRKFADIGNTVTMQ EGGIFRILDWADI NAHIISGPGIVD                AEMSSAGNLA G YTAAAVKIAEDHSDFVIGFISVNPASWP AP NP+ I ATPGVQ+VKGGD LGQ YNTP +VI DRGSDII
Sbjct:  203 LPYQERAKIAKNPTGKKLFEIMVQKETNLCLSADVATAAELLDIADKVGPEICMLKTHVDILPDFTPDFGSKLRSIADKHNFLIFEDRKFADIGNTVTMQYEGGIFRILDWADITNAHIISGPGIVDGLKLKGLSRGRGLLLLAEMSSAGNLATGAYTAAAVKIAEDHSDFVIGFISVNPASWPNAPGNPSLIHATPGVQLVKGGDALGQLYNTPSAVIADRGSDII 429          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYR5_ARATH (Uridine 5'-monophosphate synthase OS=Arabidopsis thaliana GN=PYRE-F PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.169e-94
Identity = 174/227 (76.65%), Postives = 191/227 (84.14%), Query Frame = 1
Query:    1 LKYEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            L ++ER+ L KN TG+KLF +M+KKE+NLCLAADV TAAELL IA+KVGPEICLLKTHVDILPDFTPDFGSKLRAIA+KH FLIFEDRKFADIGNTVTMQ EGGIF+IL+WADIINAH+ISGPGIVD                AEMSSAGNLA GDYTAAAVKIA+ HSDFV+GFISVNPASW    V P+ I ATPGVQMVKGGD LGQQYNTP+SVI +RGSDII
Sbjct:  217 LGFKERSELSKNPTGKKLFDIMLKKETNLCLAADVGTAAELLDIADKVGPEICLLKTHVDILPDFTPDFGSKLRAIADKHKFLIFEDRKFADIGNTVTMQYEGGIFKILEWADIINAHVISGPGIVDGLKLKGMPRGRGLLLLAEMSSAGNLATGDYTAAAVKIADAHSDFVMGFISVNPASWKCGYVYPSMIHATPGVQMVKGGDALGQQYNTPHSVITERGSDII 443          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYR5_PONAB (Uridine 5'-monophosphate synthase OS=Pongo abelii GN=UMPS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.377e-63
Identity = 124/228 (54.39%), Postives = 159/228 (69.74%), Query Frame = 1
Query:    1 LKYEERANLMK-NETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            L +  RA L + +    KL ++M KKE+NLCL+ADV+ A ELLQ+A+ +GP IC+LKTHVDIL DFT D   +L  +A++H FLIFEDRKFADIGNTV  Q EGG+F+I  WAD++NAH++ G G+V                 AEMSS G+LA GDYT AAV++AE+HS+FV+GFIS +  S     + P F+  TPGVQ+  GGD+LGQQYN+P  VI  RGSDII
Sbjct:  225 LSFSARAELPRIHPVASKLLRLMQKKETNLCLSADVSEARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKRHEFLIFEDRKFADIGNTVKKQYEGGVFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVS-----MKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDII 447          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYR5_HUMAN (Uridine 5'-monophosphate synthase OS=Homo sapiens GN=UMPS PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.180e-62
Identity = 125/228 (54.82%), Postives = 158/228 (69.30%), Query Frame = 1
Query:    1 LKYEERANLMK-NETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            L +  RA L + +    KL ++M KKE+NLCL+ADV+ A ELLQ+A+ +GP IC+LKTHVDIL DFT D   +L  +A+ H FLIFEDRKFADIGNTV  Q EGGIF+I  WAD++NAH++ G G+V                 AEMSS G+LA GDYT AAV++AE+HS+FV+GFIS +  S     + P F+  TPGVQ+  GGD+LGQQYN+P  VI  RGSDII
Sbjct:  225 LSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVS-----MKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDII 447          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYR5_MOUSE (Uridine 5'-monophosphate synthase OS=Mus musculus GN=Umps PE=2 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 4.957e-61
Identity = 120/211 (56.87%), Postives = 149/211 (70.62%), Query Frame = 1
Query:   49 KLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            KL ++M KKE+NLCL+ADV+ A ELLQ+A+ +GP IC+LKTHVDIL DFT D   +L A+A++H FLIFEDRKFADIGNTV  Q E G F+I  WADI+NAH++ G G+V                 AEMSSAG+LA G+YT AAV +AE+H +FVIGFIS +  S     + P F+  TPGVQ+  GGD LGQQYN+P  VI  RGSD+I
Sbjct:  242 KLLRLMQKKETNLCLSADVSEARELLQLADALGPSICMLKTHVDILNDFTLDVMEELTALAKRHEFLIFEDRKFADIGNTVKKQYESGTFKIASWADIVNAHVVPGSGVVKGLQEVGLPLHRACLLIAEMSSAGSLATGNYTKAAVGMAEEHCEFVIGFISGSRVS-----MKPEFLHLTPGVQLETGGDHLGQQYNSPQEVIGKRGSDVI 447          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYR5_BOVIN (Uridine 5'-monophosphate synthase OS=Bos taurus GN=UMPS PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.157e-60
Identity = 122/228 (53.51%), Postives = 154/228 (67.54%), Query Frame = 1
Query:    1 LKYEERANLM-KNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            L +  RA L   +    KL ++M KKE+NLCL+ADV+ + ELLQ+A+ +G  ICLLK HVDIL DFT D   +L  +A++H FLIFEDRKFADIGNTV  Q EGG+F+I  WAD++NAH + G G+V                 AEMSSAG LA G YT AAV++AE+HS+FVIGFIS +  S     + P F+  TPGVQ+  GGD+LGQQY++P  VI  RGSDII
Sbjct:  225 LSFGARAELPGTHPVAAKLLRLMQKKETNLCLSADVSESRELLQLADALGSRICLLKIHVDILNDFTLDVMKELTTLAKRHEFLIFEDRKFADIGNTVKKQYEGGVFKIASWADLVNAHAVPGSGVVKGLEEVGLPLHRACLLVAEMSSAGTLATGSYTEAAVQMAEEHSEFVIGFISGSRVS-----MKPEFLHLTPGVQLEAGGDNLGQQYHSPQEVIGKRGSDII 447          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_PHYBL (Orotidine 5'-phosphate decarboxylase OS=Phycomyces blakesleeanus GN=pyrG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51
Identity = 106/226 (46.90%), Postives = 142/226 (62.83%), Query Frame = 1
Query:    7 YEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPAS-WPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            Y ERA    N   R LF++M +K++NL +A DV T  ELL IA+ VGP +C+LKTH+DI+ DF  D  ++L A+A+KH+FLIFEDRKFADIGNTV  Q E G+++I  W+ I NAH + G GI+                 AEMSS G L KG YT  +V++A  + DFV GFI+ +  + +P    +  F+  TPGV +   GD LGQQY TP+ VI + G D+I
Sbjct:    9 YTERAEQHPNACARSLFELMERKKTNLSVAVDVTTKKELLSIADSVGPYVCVLKTHIDIVEDFDKDLVAQLEALAKKHDFLIFEDRKFADIGNTVKHQYEKGVYKIASWSHITNAHTVPGEGIIKGLGEVGLPLGRGLLLLAEMSSKGALTKGSYTTESVEMARRNKDFVFGFIAQHKMNEYP----DEDFVVMTPGVGLDIKGDGLGQQYRTPHEVIVESGCDVI 230          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_SCHCO (Orotidine 5'-phosphate decarboxylase OS=Schizophyllum commune GN=URA1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.141e-50
Identity = 104/232 (44.83%), Postives = 141/232 (60.78%), Query Frame = 1
Query:    1 LKYEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAP-----VNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            L Y +RA    N   + L + M +K+SNL ++ DV  +A+LL I + VGP ICL+KTHVD++ DF     +KL+A+AEKH+FLIFEDRKFADIGNTV +Q   G+ +I  W+ I NAH + GP I+                 AEMS+ G+LA G YT AAV++A ++  FVIGFI+       GAP      +  F+  TPGV +   GD +GQQY TP  V+ + G D+I
Sbjct:    7 LTYGQRAARFTNPAAKALLETMERKKSNLSVSVDVVKSADLLAIVDTVGPYICLIKTHVDVVEDFDSSLVTKLQALAEKHDFLIFEDRKFADIGNTVALQYSSGVHKIASWSHITNAHPVPGPSIISGLASVGQPLGRGLLLLAEMSTKGSLATGAYTEAAVQMARENRGFVIGFIAQRRMDGIGAPPGVNVEDEDFLVLTPGVGLDVKGDGMGQQYRTPKQVVQEDGCDVI 238          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_RHIRA (Orotidine 5'-phosphate decarboxylase OS=Rhizomucor racemosus GN=pyrG PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 104/225 (46.22%), Postives = 137/225 (60.89%), Query Frame = 1
Query:    7 YEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            Y ER     N   R LF++M + ESNL +A DV T  ELL IA+ VGP +C+LKTH+DI+ DF  D  ++L  +A+KH+FLIFEDRKFADIGNTV  Q   GI++I  W+ I NAH + G GI+                 AEMSS G L KG YT+ +V++A  + DFV GFI+ +  +      +  F+  +PGV +   GD LGQQY TP+ VI + G DII
Sbjct:    7 YSERGQQHPNACARSLFELMERNESNLSVAVDVTTKKELLSIADAVGPFVCVLKTHIDIVEDFDHDLVAQLEQLAKKHDFLIFEDRKFADIGNTVKHQYANGIYKIASWSHITNAHTVPGEGIIKGLGEVGLPLGRGLLLLAEMSSKGALTKGSYTSESVEMARRNKDFVFGFIAQHKMN---EHDDEDFVVMSPGVGLDVKGDGLGQQYRTPHEVIVESGGDII 228          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_RHIPU (Orotidine 5'-phosphate decarboxylase OS=Rhizomucor pusillus GN=PYR4 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.424e-49
Identity = 102/225 (45.33%), Postives = 137/225 (60.89%), Query Frame = 1
Query:    7 YEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVKGGDDLGQQYNTPYSVIYDRGSDII 681
            Y +RA    N   + LF++M +K++NL +AADV T  ELL IA+  GP IC+LKTH+DI+ DF  D  ++L  +A+KH+FL+FEDRKFADIGNTV  Q   G+++I  WA I NAH + G GI+                 AEMSS G L KG YT  +V++A  + DFV GFI+ +  +      +  F+   PGV +   GD LGQQY TPY VI + G D+I
Sbjct:    7 YADRAARHPNGCAKALFELMERKQTNLSIAADVTTKKELLHIADACGPYICILKTHIDIIDDFDEDLVAQLCELAKKHDFLLFEDRKFADIGNTVKHQYGKGVYKIASWAHITNAHTVPGEGIITGLREVGLPLGRGLLLLAEMSSKGALTKGSYTTESVEMARRNQDFVFGFIAQHKMN---EKDDEDFVVMAPGVGLDVKGDGLGQQYRTPYQVIVESGCDVI 228          
The following BLAST results are available for this feature:
BLAST of CX291588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PYR5_TOBAC2.276e-9878.85Uridine 5'-monophosphate synthase (Fragment) OS=Ni... [more]
PYR5_ARATH1.169e-9476.65Uridine 5'-monophosphate synthase OS=Arabidopsis t... [more]
PYR5_PONAB2.377e-6354.39Uridine 5'-monophosphate synthase OS=Pongo abelii ... [more]
PYR5_HUMAN1.180e-6254.82Uridine 5'-monophosphate synthase OS=Homo sapiens ... [more]
PYR5_MOUSE4.957e-6156.87Uridine 5'-monophosphate synthase OS=Mus musculus ... [more]
PYR5_BOVIN7.157e-6053.51Uridine 5'-monophosphate synthase OS=Bos taurus GN... [more]
PYRF_PHYBL2.726e-5146.90Orotidine 5'-phosphate decarboxylase OS=Phycomyces... [more]
PYRF_SCHCO5.141e-5044.83Orotidine 5'-phosphate decarboxylase OS=Schizophyl... [more]
PYRF_RHIRA1.145e-4946.22Orotidine 5'-phosphate decarboxylase OS=Rhizomucor... [more]
PYRF_RHIPU7.424e-4945.33Orotidine 5'-phosphate decarboxylase OS=Rhizomucor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03011A06SK OF2 Citrus clementina cDNA clone C03011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291588 ID=CX291588; Name=CX291588; organism=Citrus clementina; type=EST; length=682bp
TTGAAGTACGAAGAGAGGGCGAATTTGATGAAGAATGAGACTGGGAGAAA
ATTGTTTCAAGTGATGGTGAAGAAGGAGAGTAATTTGTGTTTGGCTGCTG
ATGTTGCCACTGCTGCTGAGTTGCTTCAAATTGCCGAGAAGGTTGGACCA
GAGATCTGCTTGTTGAAAACCCATGTCGATATATTGCCTGATTTCACCCC
AGATTTTGGTTCCAAACTTCGTGCGATTGCAGAAAAGCATAACTTCCTAA
TTTTTGAAGATCGCAAGTTTGCGGACATTGGTAACACTGTGACCATGCAG
GCTGAAGGTGGTATATTTCGTATATTGGATTGGGCCGATATAATAAATGC
TCACATAATCTCTGGACCGGGAATTGTGGATGGTCTGAAATTAAAGGGAT
TGCCTCGTGGTAGGGGTCTGTTGCTACTGGCTGAGATGAGCTCAGCTGGT
AACCTAGCAAAGGGAGACTATACAGCAGCAGCTGTGAAAATTGCCGAGGA
TCATTCTGATTTTGTCATTGGATTCATCTCAGTTAATCCAGCATCATGGC
CAGGGGCACCAGTCAATCCAGCCTTTATTCAAGCAACCCCTGGAGTTCAA
ATGGTAAAGGGAGGTGATGATCTAGGCCAACAATATAACACTCCATACTC
GGTCATCTACGATAGGGGTAGTGACATAATTA
back to top