CX291592

Overview
NameCX291592
Unique NameCX291592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15091 contig Ccv1_Contig15091:1263..1866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.416e-103
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLK VQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  404 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 4.556e-102
Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR DPNQNTGIVIQKSRIGATSDLK VQGSFPTYLGRPWKEYSRTVIMQSSITD+IHPAGWHEWDGNFALNTLFYGEHQN+GAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  404 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.985e-89
Identity = 155/181 (85.64%), Postives = 167/181 (92.27%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFFV CL+AGTVDFIFGN AAV Q+CDIHAR+P SGQKNMVTAQGRTDPNQNTGIVIQK RIGATSDL+ VQ SFPTYLGRPWKEYSRTVIMQSSITD+I PAGWHEW+GNFAL+TLFYGE+ N+GAGA TSGRVKWKG +VITS+TEAQA+TPG FIAG SWL STGFPFSLGL
Sbjct:  403 YVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQKSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 9.854e-89
Identity = 153/181 (84.53%), Postives = 168/181 (92.82%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFF+NC IAGTVDFIFGNAA VLQ+CDIHAR+P SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDL+ VQ SFPTYLGRPWKEYSRTV+MQSSIT++I+PAGW  WDGNFAL+TL+YGE+QN+GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +T FPFSLGL
Sbjct:  139 YVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.247e-83
Identity = 145/181 (80.11%), Postives = 160/181 (88.40%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFFV CLIAGTVDFIFGNAA VLQ+CDIHAR+PNSGQKNMVTAQGRTDPNQNTGIVIQK RIGATSDL+ V+GSFPTYLGRPWKEYS+TVIMQS+I+D+I P GW EW G FALNTL Y E+ N+GAGAGT+ RVKW+GF+VIT+A EAQ +T G FI G  WL STGFPFSLGL
Sbjct:  412 YVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 6.402e-80
Identity = 140/181 (77.35%), Postives = 154/181 (85.08%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFFV C I GTVDFIFGNAAAVLQ+CDI+AR+PNSGQKNMVTAQGR+DPNQNTGIVIQ  RIG TSDL  V+G+FPTYLGRPWKEYSRTVIMQS I+D+I P GWHEW G+FAL+TL Y E+ N G GAGT+ RVKWKG++VITS TEAQ FT G FI G  WL STGFPFSL L
Sbjct:  407 YVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSLSL 587          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.693e-64
Identity = 119/181 (65.75%), Postives = 143/181 (79.01%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQF+ +C + GTVDFIFGNAAAVLQNC+I AR+P S + N +TAQGR+DPNQNTGI+I  SR+ A SDL+ V GS  TYLGRPW++YSRTV M++S+  LI P GW EWDGNFAL TLFY E QN+G GA TSGRV W GFRV+ SA+EA  FT G+F+AG SW+ S+  PF+ GL
Sbjct:  333 YVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPRS-KTNTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.288e-61
Identity = 110/181 (60.77%), Postives = 140/181 (77.35%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHS RQF+  C I GTVDFIFGNAA VLQNC+I ARKP + + N +TAQGRTDPNQ+TGI+I   R+ A SDLK VQ S  T+LGRPWK+YSRTV +++ +  LI+PAGW EW G+FALNTL+Y E+ N+G G+ T+ RVKW+G+ V+TS ++   FT G+FIAG+SWL +T  PF+ GL
Sbjct:  331 YVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.634e-60
Identity = 110/181 (60.77%), Postives = 135/181 (74.59%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            Y H+ RQF+ +  I GTVDFIFGNAA V QNC++  RK   GQ+N +TAQGRTDPNQNTG  IQ   I A++DL+ V+ +F +YLGRPWKEYSRTV+M+S I+D+I PAGW EWD +FAL TLFYGE++N G G+GTS RVKW G+ VITS   A+ FT    I G SWLGSTG  ++ GL
Sbjct:  363 YPHNYRQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGRTDPNQNTGTSIQNCEIFASADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
BLAST of CX291592 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.611e-60
Identity = 111/181 (61.33%), Postives = 131/181 (72.38%), Query Frame = 3
Query:    3 YVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 545
            YVHSNRQFF  C I GTVDFIFGNAA +LQ+C+I+ARKP + QK  +TAQ R DPNQNTGI I   ++ AT DL+  +GS+PTYLGRPWK YSR V M S + D I P GW EW+G FAL++L+YGE+ N G G+G   RVKW G+ VITS  EA  FT   FI+GSSWL STG  F  GL
Sbjct:  405 YVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
The following BLAST results are available for this feature:
BLAST of CX291592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PME1_CITSI2.416e-10399.45Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_CITSI4.556e-10297.79Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PMEU1_SOLLC1.985e-8985.64Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME_DAUCA9.854e-8984.53Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME3_ARATH1.247e-8380.11Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH6.402e-8077.35Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME17_ARATH1.693e-6465.75Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME2_CITSI2.288e-6160.77Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME1_FICAW5.634e-6060.77Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME61_ARATH9.611e-6061.33Probable pectinesterase/pectinesterase inhibitor 6... [more]

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Properties
Property NameValue
Genbank descriptionC03011A10SK OF2 Citrus clementina cDNA clone C03011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291592 ID=CX291592; Name=CX291592; organism=Citrus clementina; type=EST; length=604bp
TCTACGTCCACTCGAACCGCCAGTTCTTTGTGAACTGCTTAATTGCTGGC
ACGGTTGATTTCATTTTTGGTAATGCTGCAGCCGTGTTACAAAATTGTGA
CATCCATGCACGAAAGCCCAATTCCGGCCAAAAAAATATGGTCACAGCCC
AAGGCAGGACTGACCCTAACCAAAACACCGGCATTGTCATTCAAAAATCT
AGGATTGGTGCCACCTCCGATTTAAAACTGGTTCAGGGTAGTTTCCCGAC
GTACCTCGGCAGGCCCTGGAAGGAGTACTCGAGGACGGTGATCATGCAGT
CGTCGATTACTGACTTGATCCACCCTGCCGGGTGGCACGAGTGGGATGGT
AACTTCGCGTTGAACACATTGTTTTACGGAGAGCATCAGAACAGCGGAGC
CGGTGCCGGAACTTCAGGGAGAGTGAAATGGAAGGGATTTAGGGTTATTA
CAAGTGCTACCGAGGCTCAAGCTTTTACTCCTGGAAGCTTCATTGCTGGT
AGTAGCTGGCTGGGCTCCACTGGTTTCCCATTCTCCCTTGGTTTGTAATA
TTCACTAGGAGTTTTAATTAATATGTTTTGTATTAGAGGATCCATCGATC
TCGG
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