CX291606

Overview
NameCX291606
Unique NameCX291606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291606 vs. ExPASy Swiss-Prot
Match: GOGC4_ARATH (Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.020e-77
Identity = 149/226 (65.93%), Postives = 179/226 (79.20%), Query Frame = 3 
Query:   15 QHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHXXXXXXXXXXXXXXXXXYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRRAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSD 692
            QHL+EK  EESEKMDEDS++I+ELR+ NEYQR+QIL LE  L+QT+A QEE K  +  EI+KSK II+ LN KLANC+RTI++KNVELLNLQTALGQY+AEIEAK H                  LK+ D++ E S+ EKEEI  K+ H+E + AE K R +K+E+DNAK+RR +EQSMTRLNRMS+DSDFLVDRRIVIKLLVTYFQRNHS+EVLDLMVRMLGFS+
Sbjct:  379 QHLLEKETEESEKMDEDSRLIDELRQTNEYQRSQILGLEKALRQTMANQEEIKSSSDLEIRKSKGIIEDLNQKLANCLRTIDSKNVELLNLQTALGQYYAEIEAKEHFERELAVAKEDAMKLSARLKDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVEDDNAKVRRVLEQSMTRLNRMSMDSDFLVDRRIVIKLLVTYFQRNHSREVLDLMVRMLGFSE 604
[Close]
BLAST of CX291606 vs. ExPASy Swiss-Prot
Match: GOGC3_ARATH (Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.613e-77
Identity = 144/226 (63.72%), Postives = 178/226 (78.76%), Query Frame = 3 
Query:   15 QHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHXXXXXXXXXXXXXXXXXYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRRAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSD 692
            QHL+EK  EESEKMDEDS++IEELR+ NEYQR+QI HLE  LKQ ++ QE+ ++ N ++I+K K+ +D LN KL NC+RTIE+KNVELLNLQTALGQY+AEIEAK H                  LK++D+R E S  EKE++  KL H+EK+ AE K R  K+EEDNAK+RR +EQSMTRLNRMS++SD+LVDRRIVIKLLVTYFQ+NH+KEVLDLMVRMLGFS+
Sbjct:  374 QHLLEKETEESEKMDEDSRLIEELRQTNEYQRSQISHLEKSLKQAISNQEDNRLSNDNQIRKLKDTVDDLNQKLTNCLRTIESKNVELLNLQTALGQYYAEIEAKEHFERELAMAKDELMKLSARLKDSDERLESSNKEKEDVTSKLLHAEKVAAEWKNRVTKVEEDNAKVRRVLEQSMTRLNRMSMESDYLVDRRIVIKLLVTYFQKNHNKEVLDLMVRMLGFSE 599
The following BLAST results are available for this feature:
BLAST of CX291606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GOGC4_ARATH1.020e-7765.93Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 ... [more]
GOGC3_ARATH6.613e-7763.72Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 ... [more]
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Properties
Property NameValue
Genbank descriptionC03011C02SK OF2 Citrus clementina cDNA clone C03011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291606 ID=CX291606; Name=CX291606; organism=Citrus clementina; type=EST; length=692bp
GAGGCCCGTCTTAGCAGCATCTGATAGAAAAGGCACAAGAAGAATCAGAA
AAAATGGATGAGGACAGTAAGATCATTGAAGAGCTTCGTGAGAATAATGA
ATATCAAAGGGCTCAAATATTGCATTTGGAAAATGTTCTGAAACAGACTC
TTGCAAAGCAGGAAGAATTCAAGATGATGAACCACAGTGAAATTCAGAAG
TCTAAGGAAATCATTGATGGTCTGAACAATAAACTTGCAAACTGTATGAG
GACAATAGAAGCAAAAAATGTTGAACTTCTGAATCTTCAAACTGCTCTCG
GCCAGTATTTTGCTGAAATTGAAGCTAAGGGACATTTGGAGCGTGAGTTG
GCTTTGGCAAGAGAAGAATCAGCTAAACTTTCCGAGTATTTGAAAAATGC
AGATCAACGAGCAGAAGTATCAAGGAGCGAGAAGGAAGAAATTTTGGTTA
AGCTTTCGCATTCTGAAAAAATGTTGGCAGAAGGCAAGGGTAGGGCAAAC
AAGCTTGAGGAAGATAATGCAAAACTACGCCGTGCTGTTGAACAAAGTAT
GACAAGGCTTAACAGAATGTCAGTGGATTCAGATTTTCTTGTAGACAGGC
GCATCGTGATAAAGTTACTAGTCACCTACTTCCAGAGAAACCACAGTAAA
GAGGTTCTGGATCTTATGGTCCGGATGCTAGGATTTTCTGAT
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