CX291621

Overview
NameCX291621
Unique NameCX291621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:152..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.776e-99
Identity = 178/220 (80.91%), Postives = 195/220 (88.64%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            +AY+HELP+ GLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAG++K+G+QLD EVHRKYI+GGHVAAYM TLMEDEPEKYQSHF+EYIKKGI+AD LE LYKKVHAAIRA+P  KKS+KP PK HKRYNLKKLTY+ERKA+LVERLNA +SA D DD+
Sbjct:   77 SAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAADGDDD 296          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.484e-93
Identity = 166/220 (75.45%), Postives = 186/220 (84.55%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            AAY+HELPR GLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+EALYKKVHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNA +S+   DD+
Sbjct:   78 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 2.484e-93
Identity = 166/220 (75.45%), Postives = 186/220 (84.55%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            AAY+HELPR GLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+EALYKKVHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNA +S+   DD+
Sbjct:   78 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.103e-92
Identity = 165/220 (75.00%), Postives = 185/220 (84.09%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            AAY+HELPR GLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+E+LYKKVHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNA +S+   DD+
Sbjct:   78 AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.685e-92
Identity = 164/220 (74.55%), Postives = 185/220 (84.09%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            +AYAHELP+ GL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +E LYKKVHAAIRADP  KK+ KPAPK+HKRYNLKKLTYEERK KL+ER+ A + A  +DD+
Sbjct:   77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDD 296          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 335.88 bits (860), Expect = 1.363e-91
Identity = 163/220 (74.09%), Postives = 185/220 (84.09%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            +AYAHELP+ GL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +E +YKKVHAAIRA+P  KK+EK APKEHKRYNLKKLTYEERK KL+ER+ A + A  +DD+
Sbjct:   77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDD 296          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.812e-55
Identity = 110/221 (49.77%), Postives = 144/221 (65.16%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            AAY+HELP+ G++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG R+F            IPHS KRF G+  + K  +A+VHR++I+  H+A YM TL E+EPE +Q  F++YIK GI ADG+E +YKK H AIRADP   +  K      KR+N  KLT  ERK + V+++ A      E+ E
Sbjct:   77 AAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKASFQKKLEETE 296          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.812e-55
Identity = 104/207 (50.24%), Postives = 143/207 (69.08%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            +AYAHELPR GL+ GLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PHS+ RF GF ++ K  +AE HR  I G HVA YMS L E++ ++Y+  F++++  G++AD L A Y+K HA IRADP+   S K A K  KR+  K+LTY+ERK ++ ++
Sbjct:   77 SAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEEDEDRYKRQFSKFLSNGMNADNLVATYQKAHANIRADPS--PSAKKAAKPSKRHTAKRLTYDERKQRVADK 281          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.020e-54
Identity = 104/209 (49.76%), Postives = 148/209 (70.81%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRAD--PTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            +AY+HELPR GL+VGLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PHS+ RF GF ++ K+ +AE HR  I G HVA YM+ L E++ ++Y+  F++++  G++AD L A Y+KVH+AIRAD  P  KK+ KP+    KR+  K+LTY+ERK ++ ++
Sbjct:   77 SAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPS----KRHTAKRLTYDERKQRVADK 281          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.332e-54
Identity = 114/208 (54.81%), Postives = 141/208 (67.79%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTM-KKSEKPAPKEHKRYNLKKLTYEERKAKLVE 619
            AAY+HELP+ G++VGLTNYAAAYCTGLL+ARR+LK L +D  YEG  EA GE+Y VEPAD     FR  LDVGL+KT+TG RVF            IPHS KRF G+  + K+  AE HRK+I G HVA YM  L E++ + +   F++YIK GI AD LE +YKK H  IR+DP   +K +K   KE KR+N KKLT  ERK ++VE
Sbjct:   77 AAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYIKLGIVADDLENMYKKAHENIRSDPKRDRKPKKDVSKEPKRWNAKKLTNAERKQRVVE 284          
The following BLAST results are available for this feature:
BLAST of CX291621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_CUCSA1.776e-9980.9160S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ORYSJ2.484e-9375.4560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI2.484e-9375.4560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ2.103e-9275.0060S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ARATH4.685e-9274.5560S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ARATH1.363e-9174.0960S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL5_LYSTE7.812e-5549.7760S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_CAEBR7.812e-5550.2460S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL1.020e-5449.7660S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_TOXCI1.332e-5454.8160S ribosomal protein L5 OS=Toxoptera citricida GN... [more]

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Properties
Property NameValue
Genbank descriptionC03011D05SK OF2 Citrus clementina cDNA clone C03011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291621 ID=CX291621; Name=CX291621; organism=Citrus clementina; type=EST; length=732bp
TGCTGCTTATGCCCATGAGCTTCCTCGTTCTGGACTTGAAGTAGGTCTTA
CAAACTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTC
TTGAAGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTAC
TGGAGAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTG
CTCTCCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTT
GGTGCTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGA
CAAGAGGTTTGCTGGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGG
TTCACCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACA
TTGATGGAAGATGAGCCAGAGAAGTATCAATCTCACTTCACTGAGTACAT
CAAGAAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTC
ATGCTGCCATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCT
CCCAAAGAACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAG
GAAGGCGAAGCTGGTTGAAAGGCTGAATGCCCCTCACTCGGCAGTTGATG
AGGACGACGAATGAAAGCAGCATAACTAGATATGAATTCAAATATGTGGC
AGATCTGCAGTACACATTTGTTGTTGCAGTTC
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