CX291632

Overview
NameCX291632
Unique NameCX291632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291632_ssr241 microsatellite CX291632_ssr241:241..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10112 contig Ccv1_Contig10112:569..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.145e-22
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 217
            YFSNL+  +GLLQSDQELFST GA T AIV +F  NQ AFF++FV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:  256 YFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 217
            Y++NLR  KGL+QSDQELFSTPGADT  +V  +  + + FF+ F+ +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  262 YYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.050e-21
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSS 274
            Y++NLR  KGL+QSDQELFSTPGADT  +V  +  N  AFF  FV +MIRMGNL+PLTG QGEIR NCR VN       R   ++  +VSS
Sbjct:  262 YYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNSR----IRGMENDDGVVSS 348          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.514e-20
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 223
            YF+NL+   GLLQSDQELFST G+ T AIV  F  NQ  FF+ F  SMI MGN+ PLTG+ GEIRL+C++VNG+
Sbjct:  262 YFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.811e-20
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 217
            +++NLR  KGL+QSDQELFSTPGADT  +V  +  N  +FF  F  +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  233 FYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVN 304          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.811e-20
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 217
            Y++NL   KGL+QSDQ LFSTPGADT  +V  +  N   FF  FV +MIRMGNLKPLTG QGEIR NCR VN
Sbjct:  262 YYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.281e-19
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDL 265
            YF+NL+   GLLQSDQELFS  G+ T  IV  F  NQ  FF+ FV SMI+MGN+ PLTG+ GEIR +C+ VNG S     S++  GD+
Sbjct:  263 YFTNLQSNNGLLQSDQELFSNTGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPLTGSSGEIRQDCKVVNGQS-----SATEAGDI 345          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.673e-19
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 223
            YF+NL+   GLLQSDQELFST G+ T A+V  F  NQ  FF+ F  SMI MGN+ PLTG+ GEIRL+C++V+G+
Sbjct:  232 YFANLQSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVDGS 305          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.850e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 217
            Y++NL+   G L SDQ L STPG DT  IV  F  +QN FF++F  SMI MGN++PLTGNQGEIR NCRR+N
Sbjct:  221 YYTNLQSNTGPLTSDQVLHSTPGEDTVKIVNLFAASQNQFFESFGQSMINMGNIQPLTGNQGEIRSNCRRLN 292          
BLAST of CX291632 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2
Query:    2 YFSNLRGRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 226
            Y+ NL+ +KGL+QSDQELFS+P A DT  +V  F      FF  FV +M RMGN+ PLTG QGEIRLNCR VN NS
Sbjct:  261 YYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 336          
The following BLAST results are available for this feature:
BLAST of CX291632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PER15_IPOBA6.145e-2269.44Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER22_ARATH2.335e-2163.89Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER3_ARMRU3.050e-2158.24Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER53_ARATH1.514e-2062.16Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERE5_ARMRU9.811e-2063.89Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER23_ARATH9.811e-2065.28Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER54_ARATH1.281e-1954.55Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PERA2_ARMRU1.673e-1959.46Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER2_CUCSA1.850e-1861.11Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]
PER1B_ARMRU2.416e-1860.53Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]

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Properties
Property NameValue
Genbank descriptionC03011E05SK OF2 Citrus clementina cDNA clone C03011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291632 ID=CX291632; Name=CX291632; organism=Citrus clementina; type=EST; length=483bp
ATACTTCTCCAATCTTAGAGGCCGCAAAGGCCTTCTGCAGAGTGATCAAG
AGTTGTTTTCGACTCCTGGTGCCGATACCGCTGCCATTGTCGAGGACTTT
GGGAGGAACCAGAATGCTTTCTTTAAAAACTTTGTGACCTCAATGATAAG
AATGGGAAATTTGAAACCACTGACAGGAAATCAAGGGGAGATTAGATTGA
ACTGCAGGAGGGTCAATGGAAACAGTAATATTGCAACAAGATCATCATCA
TCAGAGGGTGATTTGGTCAGCTCTTTCTAAATAAGCTAGCTTGCAGCATA
TGCGCGAGAGTTTTTGTGCTTAACAAACTCAAATTTAATCTGATCGTTTT
GCCTGAAACATGTTATGTACTTTCAAATAAATTAACGATCAAACTTGAGT
TTAATCTAATGGTCTTGTCTGAAAGATGTTATGTATTTTCAAATAGATTA
ATTAAACTTTAAAAAAAAAAAAAAAAAAAAAAA
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